A Human Protein Containing Multiple Types of Protease-Inhibitory Modules

• Published in: Proceedings of the National Academy of Sciences - PNAS 2001-03, Vol.98 (7), p.3705-3709
• Main Authors: Trexler, Mária, Bányai, László, Patthy, László
• Format: Article
• Language: English
• Subjects: Amino Acid Sequence; Base Sequence; Biochemistry; Biological Sciences; Chromosomes; Cloning, Molecular; Codons; Complementary DNA; DNA, Complementary - analysis; Gene Expression; Genes; Genome, Human; Humans; Intercellular Signaling Peptides and Proteins; Introns; Lungs; Molecular Sequence Data; Protease inhibitors; Protease Inhibitors - chemistry; Protease Inhibitors - metabolism; Protein Structure, Tertiary; Proteins; Proteins - chemistry; Proteins - genetics; Proteins - metabolism; Sequence Homology, Amino Acid
• ISSN: 0027-8424; 1091-6490
• DOI: 10.1073/pnas.061028398

By using sensitive homology-search and gene-finding programs, we have found that a genomic region from the tip of the short arm of human chromosome 16 (16p13.3) encodes a putative secreted protein consisting of a domain related to the whey acidic protein (WAP) domain, a domain homologous with follistatin modules of the Kazal-domain family (FS module), an immunoglobulin-related domain (Ig domain), two tandem domains related to Kunitz-type protease inhibitor modules (KU domains), and a domain belonging to the recently defined NTR-module family (NTR domain). The gene encoding these WAP, FS, Ig, KU, and NTR modules (hereafter referred to as the WFIKKN gene) is intron-depleted-its single 1,157-bp intron splits the WAP module. The validity of our gene prediction was confirmed by sequencing a WFIKKN cDNA cloned from a lung cDNA library. Studies on the tissue-expression pattern of the WFIKKN gene have shown that the gene is expressed primarily in pancreas, kidney, liver, placenta, and lung. As to the function of the WFIKKN protein, it is noteworthy that it contains FS, WAP, and KU modules, i.e., three different module types homologous with domains frequently involved in inhibition of serine proteases. The protein also contains an NTR module, a domain type implicated in inhibition of zinc metalloproteinases of the metzincin family. On the basis of its intriguing homologies, we suggest that the WFIKKN protein is a multivalent protease inhibitor that may control the action of multiple types of serine proteases as well as metalloproteinase(s).