GenomeInspector: Basic Software Tools for Analysis of Spatial Correlations between Genomic Structures within Megabase Sequences

The speed of acquisition of genomic sequence data exceeds the evaluation of function of the sequences by a vast margin. Most software available for the prediction of individual features does not assess the correlation of different motifs (level 1 methods). Here, we present a second-level software pa...

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Bibliographic Details
Published in:Genomics (San Diego, Calif.) Calif.), 1996-04, Vol.33 (2), p.301-304
Main Authors: Quandt, Kerstin, Grote, Korbinian, Werner, Thomas
Format: Article
Language:English
Subjects:
ADN
APLICACIONES DEL ORDENADOR
APPLICATION DES ORDINATEURS
COMPUTER APPLICATIONS
COMPUTER SOFTWARE
DNA
DNA SEQUENCING
GENOMAS
GENOME
genome sequencing projects
GENOMES
IDENTIFICACION
IDENTIFICATION
LOGICIEL
NUCLEOTIDE SEQUENCE
PROGRAMAS DE ORDENADOR
PROJET DE RECHERCHE
PROMOTERS
PROYECTOS DE INVESTIGACION
RESEARCH PROJECTS
SECUENCIA NUCLEICA
Sequence Analysis, DNA
SEQUENCE NUCLEIQUE
Software
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Description
Summary:The speed of acquisition of genomic sequence data exceeds the evaluation of function of the sequences by a vast margin. Most software available for the prediction of individual features does not assess the correlation of different motifs (level 1 methods). Here, we present a second-level software package called GenomeInspector (GI) for further analysis of results obtained with level 1 methods. Our approach does not require anya prioriknowledge about motif organization and was designed as a modular package with a graphical user interface. Three examples for GI application are presented.
ISSN:0888-7543
1089-8646
DOI:10.1006/geno.1996.0197