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GenomeInspector: Basic Software Tools for Analysis of Spatial Correlations between Genomic Structures within Megabase Sequences

The speed of acquisition of genomic sequence data exceeds the evaluation of function of the sequences by a vast margin. Most software available for the prediction of individual features does not assess the correlation of different motifs (level 1 methods). Here, we present a second-level software pa...

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Published in:	Genomics (San Diego, Calif.) Calif.), 1996-04, Vol.33 (2), p.301-304
Main Authors:	Quandt, Kerstin, Grote, Korbinian, Werner, Thomas
Format:	Article
Language:	English
Subjects:	ADN APLICACIONES DEL ORDENADOR APPLICATION DES ORDINATEURS COMPUTER APPLICATIONS COMPUTER SOFTWARE DNA DNA SEQUENCING GENOMAS GENOME genome sequencing projects GENOMES IDENTIFICACION IDENTIFICATION LOGICIEL NUCLEOTIDE SEQUENCE PROGRAMAS DE ORDENADOR PROJET DE RECHERCHE PROMOTERS PROYECTOS DE INVESTIGACION RESEARCH PROJECTS SECUENCIA NUCLEICA Sequence Analysis, DNA SEQUENCE NUCLEIQUE Software
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cited_by	cdi_FETCH-LOGICAL-c415t-4aef62560003029237651f23a8948567f0592f2e26140f314383988b911b5dbe3
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container_end_page	304
container_issue	2
container_start_page	301
container_title	Genomics (San Diego, Calif.)
container_volume	33
creator	Quandt, Kerstin Grote, Korbinian Werner, Thomas
description	The speed of acquisition of genomic sequence data exceeds the evaluation of function of the sequences by a vast margin. Most software available for the prediction of individual features does not assess the correlation of different motifs (level 1 methods). Here, we present a second-level software package called GenomeInspector (GI) for further analysis of results obtained with level 1 methods. Our approach does not require anya prioriknowledge about motif organization and was designed as a modular package with a graphical user interface. Three examples for GI application are presented.
doi_str_mv	10.1006/geno.1996.0197
format	article
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title	GenomeInspector: Basic Software Tools for Analysis of Spatial Correlations between Genomic Structures within Megabase Sequences
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