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Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench
The thermophilic strains HTA426 and HTA462 isolated from the Mariana Trench were identified as Geobacillus kaustophilus and G. stearothermophilus, respectively, based on physiologic and phylogenetic analyses using 16S rDNA sequences and DNA-DNA relatedness. The genome size of HTA426 and HTA462 was e...
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| Published in: | Extremophiles : life under extreme conditions 2004-10, Vol.8 (5), p.351-356 |
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| cites | cdi_FETCH-LOGICAL-c483t-f62b1aea50019108ad6b4322afb35fd4029a720be77c981cf0a7a203d3a78cbb3 |
| container_end_page | 356 |
| container_issue | 5 |
| container_start_page | 351 |
| container_title | Extremophiles : life under extreme conditions |
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| creator | TAKAMI, Hideto NISHI, Shinro JEI LU SHIMAMURA, Shigeru TAKAKI, Yoshihiro |
| description | The thermophilic strains HTA426 and HTA462 isolated from the Mariana Trench were identified as Geobacillus kaustophilus and G. stearothermophilus, respectively, based on physiologic and phylogenetic analyses using 16S rDNA sequences and DNA-DNA relatedness. The genome size of HTA426 and HTA462 was estimated at 3.23-3.49 Mb and 3.7-4.49 Mb, respectively. The nucleotide sequences of three independent lambda-phage inserts of G. stearothermophilus HTA462 have been determined. The organization of protein coding sequences (CDSs) in the two lambda-phage inserts was found to differ from that in the contigs corresponding to each lambda insert assembled by the shotgun clones of the G. kaustophilus HTA426 genome, although the CDS organization in another lambda insert is identical to that in the HTA426 genome. |
| doi_str_mv | 10.1007/s00792-004-0394-3 |
| format | article |
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The genome size of HTA426 and HTA462 was estimated at 3.23-3.49 Mb and 3.7-4.49 Mb, respectively. The nucleotide sequences of three independent lambda-phage inserts of G. stearothermophilus HTA462 have been determined. The organization of protein coding sequences (CDSs) in the two lambda-phage inserts was found to differ from that in the contigs corresponding to each lambda insert assembled by the shotgun clones of the G. kaustophilus HTA426 genome, although the CDS organization in another lambda insert is identical to that in the HTA426 genome.</description><identifier>ISSN: 1431-0651</identifier><identifier>EISSN: 1433-4909</identifier><identifier>DOI: 10.1007/s00792-004-0394-3</identifier><identifier>PMID: 15168170</identifier><language>eng</language><publisher>Heidelberg: Springer</publisher><subject>Bacillaceae - genetics ; Bacteriology ; Bacteriophages - genetics ; Biological and medical sciences ; Cloning, Molecular ; Deoxyribonucleic acid ; DNA ; DNA - genetics ; Electrophoresis, Gel, Pulsed-Field ; Fatty Acids - metabolism ; Fundamental and applied biological sciences. Psychology ; Genetic Techniques ; Genetics ; Genome, Bacterial ; Geobacillus ; Geobacillus kaustophilus ; Geobacillus stearothermophilus ; Microbiology ; Miscellaneous ; Models, Genetic ; Nucleic Acid Hybridization ; Phylogeny ; Quinones - chemistry ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Space life sciences ; Species Specificity ; Temperature ; Terpenes - chemistry ; Virology ; Water Microbiology</subject><ispartof>Extremophiles : life under extreme conditions, 2004-10, Vol.8 (5), p.351-356</ispartof><rights>2004 INIST-CNRS</rights><rights>Springer-Verlag 2004</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c483t-f62b1aea50019108ad6b4322afb35fd4029a720be77c981cf0a7a203d3a78cbb3</citedby><cites>FETCH-LOGICAL-c483t-f62b1aea50019108ad6b4322afb35fd4029a720be77c981cf0a7a203d3a78cbb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16213531$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15168170$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>TAKAMI, Hideto</creatorcontrib><creatorcontrib>NISHI, Shinro</creatorcontrib><creatorcontrib>JEI LU</creatorcontrib><creatorcontrib>SHIMAMURA, Shigeru</creatorcontrib><creatorcontrib>TAKAKI, Yoshihiro</creatorcontrib><title>Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench</title><title>Extremophiles : life under extreme conditions</title><addtitle>Extremophiles</addtitle><description>The thermophilic strains HTA426 and HTA462 isolated from the Mariana Trench were identified as Geobacillus kaustophilus and G. stearothermophilus, respectively, based on physiologic and phylogenetic analyses using 16S rDNA sequences and DNA-DNA relatedness. The genome size of HTA426 and HTA462 was estimated at 3.23-3.49 Mb and 3.7-4.49 Mb, respectively. The nucleotide sequences of three independent lambda-phage inserts of G. stearothermophilus HTA462 have been determined. The organization of protein coding sequences (CDSs) in the two lambda-phage inserts was found to differ from that in the contigs corresponding to each lambda insert assembled by the shotgun clones of the G. kaustophilus HTA426 genome, although the CDS organization in another lambda insert is identical to that in the HTA426 genome.</description><subject>Bacillaceae - genetics</subject><subject>Bacteriology</subject><subject>Bacteriophages - genetics</subject><subject>Biological and medical sciences</subject><subject>Cloning, Molecular</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA - genetics</subject><subject>Electrophoresis, Gel, Pulsed-Field</subject><subject>Fatty Acids - metabolism</subject><subject>Fundamental and applied biological sciences. 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Academic</collection><jtitle>Extremophiles : life under extreme conditions</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>TAKAMI, Hideto</au><au>NISHI, Shinro</au><au>JEI LU</au><au>SHIMAMURA, Shigeru</au><au>TAKAKI, Yoshihiro</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench</atitle><jtitle>Extremophiles : life under extreme conditions</jtitle><addtitle>Extremophiles</addtitle><date>2004-10-01</date><risdate>2004</risdate><volume>8</volume><issue>5</issue><spage>351</spage><epage>356</epage><pages>351-356</pages><issn>1431-0651</issn><eissn>1433-4909</eissn><abstract>The thermophilic strains HTA426 and HTA462 isolated from the Mariana Trench were identified as Geobacillus kaustophilus and G. stearothermophilus, respectively, based on physiologic and phylogenetic analyses using 16S rDNA sequences and DNA-DNA relatedness. The genome size of HTA426 and HTA462 was estimated at 3.23-3.49 Mb and 3.7-4.49 Mb, respectively. The nucleotide sequences of three independent lambda-phage inserts of G. stearothermophilus HTA462 have been determined. The organization of protein coding sequences (CDSs) in the two lambda-phage inserts was found to differ from that in the contigs corresponding to each lambda insert assembled by the shotgun clones of the G. kaustophilus HTA426 genome, although the CDS organization in another lambda insert is identical to that in the HTA426 genome.</abstract><cop>Heidelberg</cop><cop>Tokyo</cop><pub>Springer</pub><pmid>15168170</pmid><doi>10.1007/s00792-004-0394-3</doi><tpages>6</tpages></addata></record> |
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| ispartof | Extremophiles : life under extreme conditions, 2004-10, Vol.8 (5), p.351-356 |
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| source | Springer Nature:Jisc Collections:Springer Nature Read and Publish 2023-2025: Springer Reading List |
| subjects | Bacillaceae - genetics Bacteriology Bacteriophages - genetics Biological and medical sciences Cloning, Molecular Deoxyribonucleic acid DNA DNA - genetics Electrophoresis, Gel, Pulsed-Field Fatty Acids - metabolism Fundamental and applied biological sciences. Psychology Genetic Techniques Genetics Genome, Bacterial Geobacillus Geobacillus kaustophilus Geobacillus stearothermophilus Microbiology Miscellaneous Models, Genetic Nucleic Acid Hybridization Phylogeny Quinones - chemistry RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Space life sciences Species Specificity Temperature Terpenes - chemistry Virology Water Microbiology |
| title | Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench |
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