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Influence of the electron acceptor on nitrite reductase gene ( nir) diversity in an activated sludge community
Analyses of the nitrite reductase gene diversities ( nirK and nirS) in an activated sludge community fed with both nitrite and glucose were conducted. Results suggest that the topology of nirK and nirS gene fragment-based phylogenetic trees is influenced more by the available electron acceptor than...
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Published in: | Journal of bioscience and bioengineering 2009-11, Vol.108 (5), p.394-399 |
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container_end_page | 399 |
container_issue | 5 |
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container_title | Journal of bioscience and bioengineering |
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creator | Nittami, Tadashi Magura, Takayuki Imai, Yuko Matsumoto, Kanji |
description | Analyses of the nitrite reductase gene diversities (
nirK and
nirS) in an activated sludge community fed with both nitrite and glucose were conducted. Results suggest that the topology of
nirK and
nirS gene fragment-based phylogenetic trees is influenced more by the available electron acceptor than by the carbon source. A denitrification reactor was operated for 53 days and a clone library constructed when the denitrifying communities in the SBR were supplied with both nitrite and glucose. Half of the
nirK and nearly all the
nirS gene fragments formed a cluster that was separate from a cluster containing
nirK and
nirS sequences derived from other communities in nitrate-fed reactors. On the other hand,
nirK and
nirS fragments obtained with glucose as the carbon source were similar to those detected in communities fed with other carbon sources. |
doi_str_mv | 10.1016/j.jbiosc.2009.05.007 |
format | article |
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nirK and
nirS) in an activated sludge community fed with both nitrite and glucose were conducted. Results suggest that the topology of
nirK and
nirS gene fragment-based phylogenetic trees is influenced more by the available electron acceptor than by the carbon source. A denitrification reactor was operated for 53 days and a clone library constructed when the denitrifying communities in the SBR were supplied with both nitrite and glucose. Half of the
nirK and nearly all the
nirS gene fragments formed a cluster that was separate from a cluster containing
nirK and
nirS sequences derived from other communities in nitrate-fed reactors. On the other hand,
nirK and
nirS fragments obtained with glucose as the carbon source were similar to those detected in communities fed with other carbon sources.</description><identifier>ISSN: 1389-1723</identifier><identifier>EISSN: 1347-4421</identifier><identifier>DOI: 10.1016/j.jbiosc.2009.05.007</identifier><identifier>PMID: 19804863</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>ACTIVATED SLUDGE ; AGUAS RESIDUALES ; Ammonia - metabolism ; BACTERIA ; Bacteria, Aerobic - classification ; Bacteria, Aerobic - genetics ; Bacteria, Aerobic - metabolism ; Biological and medical sciences ; Biological treatment of waters ; Bioreactors ; Biotechnology ; BOUE ACTIVEE ; Denitrification ; EAU USEE ; Electron acceptor ; Electron Transport ; Environment and pollution ; Fundamental and applied biological sciences. Psychology ; GENE ; GENES ; Genetic Variation ; http://www.fao.org/aos/agrovoc#c_29521 ; http://www.fao.org/aos/agrovoc#c_3214 ; http://www.fao.org/aos/agrovoc#c_765 ; http://www.fao.org/aos/agrovoc#c_8308 ; http://www.fao.org/aos/agrovoc#c_8611 ; Industrial applications and implications. Economical aspects ; LODOS ACTIVADOS ; Methods. Procedures. Technologies ; NITRITE REDUCTASE ; Nitrite reductase genes ( nirK, nirS) ; Nitrite Reductases - chemistry ; Nitrite Reductases - genetics ; Nitrite Reductases - metabolism ; NITRITO REDUCTASA ; Sequencing batch reactor (SBR) ; Sewage - microbiology ; Species Specificity ; Various methods and equipments ; WASTEWATER ; Wastewater treatment</subject><ispartof>Journal of bioscience and bioengineering, 2009-11, Vol.108 (5), p.394-399</ispartof><rights>2009</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c687t-282bcf8ad94a44bd36aae713ed55c239832fede7227a2a657326b5c752aef9203</citedby><cites>FETCH-LOGICAL-c687t-282bcf8ad94a44bd36aae713ed55c239832fede7227a2a657326b5c752aef9203</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27905,27906</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22300288$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19804863$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nittami, Tadashi</creatorcontrib><creatorcontrib>Magura, Takayuki</creatorcontrib><creatorcontrib>Imai, Yuko</creatorcontrib><creatorcontrib>Matsumoto, Kanji</creatorcontrib><title>Influence of the electron acceptor on nitrite reductase gene ( nir) diversity in an activated sludge community</title><title>Journal of bioscience and bioengineering</title><addtitle>J Biosci Bioeng</addtitle><description>Analyses of the nitrite reductase gene diversities (
nirK and
nirS) in an activated sludge community fed with both nitrite and glucose were conducted. Results suggest that the topology of
nirK and
nirS gene fragment-based phylogenetic trees is influenced more by the available electron acceptor than by the carbon source. A denitrification reactor was operated for 53 days and a clone library constructed when the denitrifying communities in the SBR were supplied with both nitrite and glucose. Half of the
nirK and nearly all the
nirS gene fragments formed a cluster that was separate from a cluster containing
nirK and
nirS sequences derived from other communities in nitrate-fed reactors. On the other hand,
nirK and
nirS fragments obtained with glucose as the carbon source were similar to those detected in communities fed with other carbon sources.</description><subject>ACTIVATED SLUDGE</subject><subject>AGUAS RESIDUALES</subject><subject>Ammonia - metabolism</subject><subject>BACTERIA</subject><subject>Bacteria, Aerobic - classification</subject><subject>Bacteria, Aerobic - genetics</subject><subject>Bacteria, Aerobic - metabolism</subject><subject>Biological and medical sciences</subject><subject>Biological treatment of waters</subject><subject>Bioreactors</subject><subject>Biotechnology</subject><subject>BOUE ACTIVEE</subject><subject>Denitrification</subject><subject>EAU USEE</subject><subject>Electron acceptor</subject><subject>Electron Transport</subject><subject>Environment and pollution</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>GENE</subject><subject>GENES</subject><subject>Genetic Variation</subject><subject>http://www.fao.org/aos/agrovoc#c_29521</subject><subject>http://www.fao.org/aos/agrovoc#c_3214</subject><subject>http://www.fao.org/aos/agrovoc#c_765</subject><subject>http://www.fao.org/aos/agrovoc#c_8308</subject><subject>http://www.fao.org/aos/agrovoc#c_8611</subject><subject>Industrial applications and implications. Economical aspects</subject><subject>LODOS ACTIVADOS</subject><subject>Methods. Procedures. Technologies</subject><subject>NITRITE REDUCTASE</subject><subject>Nitrite reductase genes ( nirK, nirS)</subject><subject>Nitrite Reductases - chemistry</subject><subject>Nitrite Reductases - genetics</subject><subject>Nitrite Reductases - metabolism</subject><subject>NITRITO REDUCTASA</subject><subject>Sequencing batch reactor (SBR)</subject><subject>Sewage - microbiology</subject><subject>Species Specificity</subject><subject>Various methods and equipments</subject><subject>WASTEWATER</subject><subject>Wastewater treatment</subject><issn>1389-1723</issn><issn>1347-4421</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNp9kU2L1TAUhosozof-A5VsHHXRmq826UaQwY-RAV3oOqTJyTWXtrkm6YX7703pRXeTTQ68z3sIearqBcENwaR7v2_2gw_JNBTjvsFtg7F4VF0SxkXNOSWP11n2NRGUXVRXKe0xJgIL8rS6IL3EXHbssprvZjcuMBtAwaH8GxCMYHIMM9LGwCGHiMo8-xx9BhTBLibrBGgHM6C3JYjvkPVHiMnnE_KltjazP-oMFqVxsTtAJkzTUnacnlVPnB4TPD_f19Wvz59-3n6t779_ubv9eF-bTopcU0kH46S2PdecD5Z1WoMgDGzbGsp6yagDC4JSoanuWsFoN7RGtFSD6ylm19Wbbe8hhj8LpKwmnwyMo54hLEnJrm-l6DEp5M2DJCWUtJyzAvINNDGkFMGpQ_STjidFsFqNqL3ajKjViMKtKkZK7dV5_zJMYP-XzgoK8PoM6GT06KKejU__OEoZxlTKwr3cOKeD0rtYmG8_KCa4HEG6kn_Ycij_evQQVTJ-FWt9LEaVDf7hl_4F8m20ug</recordid><startdate>20091101</startdate><enddate>20091101</enddate><creator>Nittami, Tadashi</creator><creator>Magura, Takayuki</creator><creator>Imai, Yuko</creator><creator>Matsumoto, Kanji</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20091101</creationdate><title>Influence of the electron acceptor on nitrite reductase gene ( nir) diversity in an activated sludge community</title><author>Nittami, Tadashi ; Magura, Takayuki ; Imai, Yuko ; Matsumoto, Kanji</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c687t-282bcf8ad94a44bd36aae713ed55c239832fede7227a2a657326b5c752aef9203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>ACTIVATED SLUDGE</topic><topic>AGUAS RESIDUALES</topic><topic>Ammonia - metabolism</topic><topic>BACTERIA</topic><topic>Bacteria, Aerobic - classification</topic><topic>Bacteria, Aerobic - genetics</topic><topic>Bacteria, Aerobic - metabolism</topic><topic>Biological and medical sciences</topic><topic>Biological treatment of waters</topic><topic>Bioreactors</topic><topic>Biotechnology</topic><topic>BOUE ACTIVEE</topic><topic>Denitrification</topic><topic>EAU USEE</topic><topic>Electron acceptor</topic><topic>Electron Transport</topic><topic>Environment and pollution</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>GENE</topic><topic>GENES</topic><topic>Genetic Variation</topic><topic>http://www.fao.org/aos/agrovoc#c_29521</topic><topic>http://www.fao.org/aos/agrovoc#c_3214</topic><topic>http://www.fao.org/aos/agrovoc#c_765</topic><topic>http://www.fao.org/aos/agrovoc#c_8308</topic><topic>http://www.fao.org/aos/agrovoc#c_8611</topic><topic>Industrial applications and implications. Economical aspects</topic><topic>LODOS ACTIVADOS</topic><topic>Methods. Procedures. Technologies</topic><topic>NITRITE REDUCTASE</topic><topic>Nitrite reductase genes ( nirK, nirS)</topic><topic>Nitrite Reductases - chemistry</topic><topic>Nitrite Reductases - genetics</topic><topic>Nitrite Reductases - metabolism</topic><topic>NITRITO REDUCTASA</topic><topic>Sequencing batch reactor (SBR)</topic><topic>Sewage - microbiology</topic><topic>Species Specificity</topic><topic>Various methods and equipments</topic><topic>WASTEWATER</topic><topic>Wastewater treatment</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nittami, Tadashi</creatorcontrib><creatorcontrib>Magura, Takayuki</creatorcontrib><creatorcontrib>Imai, Yuko</creatorcontrib><creatorcontrib>Matsumoto, Kanji</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of bioscience and bioengineering</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nittami, Tadashi</au><au>Magura, Takayuki</au><au>Imai, Yuko</au><au>Matsumoto, Kanji</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Influence of the electron acceptor on nitrite reductase gene ( nir) diversity in an activated sludge community</atitle><jtitle>Journal of bioscience and bioengineering</jtitle><addtitle>J Biosci Bioeng</addtitle><date>2009-11-01</date><risdate>2009</risdate><volume>108</volume><issue>5</issue><spage>394</spage><epage>399</epage><pages>394-399</pages><issn>1389-1723</issn><eissn>1347-4421</eissn><abstract>Analyses of the nitrite reductase gene diversities (
nirK and
nirS) in an activated sludge community fed with both nitrite and glucose were conducted. Results suggest that the topology of
nirK and
nirS gene fragment-based phylogenetic trees is influenced more by the available electron acceptor than by the carbon source. A denitrification reactor was operated for 53 days and a clone library constructed when the denitrifying communities in the SBR were supplied with both nitrite and glucose. Half of the
nirK and nearly all the
nirS gene fragments formed a cluster that was separate from a cluster containing
nirK and
nirS sequences derived from other communities in nitrate-fed reactors. On the other hand,
nirK and
nirS fragments obtained with glucose as the carbon source were similar to those detected in communities fed with other carbon sources.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><pmid>19804863</pmid><doi>10.1016/j.jbiosc.2009.05.007</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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subjects | ACTIVATED SLUDGE AGUAS RESIDUALES Ammonia - metabolism BACTERIA Bacteria, Aerobic - classification Bacteria, Aerobic - genetics Bacteria, Aerobic - metabolism Biological and medical sciences Biological treatment of waters Bioreactors Biotechnology BOUE ACTIVEE Denitrification EAU USEE Electron acceptor Electron Transport Environment and pollution Fundamental and applied biological sciences. Psychology GENE GENES Genetic Variation http://www.fao.org/aos/agrovoc#c_29521 http://www.fao.org/aos/agrovoc#c_3214 http://www.fao.org/aos/agrovoc#c_765 http://www.fao.org/aos/agrovoc#c_8308 http://www.fao.org/aos/agrovoc#c_8611 Industrial applications and implications. Economical aspects LODOS ACTIVADOS Methods. Procedures. Technologies NITRITE REDUCTASE Nitrite reductase genes ( nirK, nirS) Nitrite Reductases - chemistry Nitrite Reductases - genetics Nitrite Reductases - metabolism NITRITO REDUCTASA Sequencing batch reactor (SBR) Sewage - microbiology Species Specificity Various methods and equipments WASTEWATER Wastewater treatment |
title | Influence of the electron acceptor on nitrite reductase gene ( nir) diversity in an activated sludge community |
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