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Generic realignment in primuloid families of the Ericales s.l.: a phylogenetic analysis based on DNA sequences from three chloroplast genes and morphology
The phylogenetic interrelationships in Primulaceae, Myrsinaceae, and Theophrastaceae were investigated using DNA sequence data from the chloroplast genes atpB, ndhF, and rbcL. The three genes were analyzed separately, together, and in combination with morphology, using parsimony jackknifing. The seq...
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Published in: | American journal of botany 2000-09, Vol.87 (9), p.1325-1341 |
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description | The phylogenetic interrelationships in Primulaceae, Myrsinaceae, and Theophrastaceae were investigated using DNA sequence data from the chloroplast genes atpB, ndhF, and rbcL. The three genes were analyzed separately, together, and in combination with morphology, using parsimony jackknifing. The sequence data are further explored by analyses of first and second codon position only, third positions only, and transversions only. The results show that all codon positions contribute group support to the ndhF tree, whereas third codon positions provide most of the structure in the atpB and rbcL trees. Analyzed separately, transversions in atpB and rbcL have little structure, whereas in ndhF they produce a well-resolved tree. We conclude that the most informative and robust results are obtained from analyses with all codon positions included and that the tree resulting from the combined analysis of all available data provides the best estimate of phylogeny. The results show that Maesa is sister to all other taxa from the three families. Theophrastaceae are well supported, but both Myrsinaceae and Primulaceae are paraphyletic. We conclude that four families should be recognized, Maesaceae, Theophrastaceae, Primulaceae, and Myrsinaceae. For all families to be monophyletic, Samolus was transferred to Theophrastaceae, and Lysimachia, Anagallis, Trientalis, Glaux, Asterolinon, and Pelletiera were moved to the Myrsinaceae together with the genera Coris, Ardisiandra, and Cyclamen. |
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The three genes were analyzed separately, together, and in combination with morphology, using parsimony jackknifing. The sequence data are further explored by analyses of first and second codon position only, third positions only, and transversions only. The results show that all codon positions contribute group support to the ndhF tree, whereas third codon positions provide most of the structure in the atpB and rbcL trees. Analyzed separately, transversions in atpB and rbcL have little structure, whereas in ndhF they produce a well-resolved tree. We conclude that the most informative and robust results are obtained from analyses with all codon positions included and that the tree resulting from the combined analysis of all available data provides the best estimate of phylogeny. The results show that Maesa is sister to all other taxa from the three families. Theophrastaceae are well supported, but both Myrsinaceae and Primulaceae are paraphyletic. We conclude that four families should be recognized, Maesaceae, Theophrastaceae, Primulaceae, and Myrsinaceae. For all families to be monophyletic, Samolus was transferred to Theophrastaceae, and Lysimachia, Anagallis, Trientalis, Glaux, Asterolinon, and Pelletiera were moved to the Myrsinaceae together with the genera Coris, Ardisiandra, and Cyclamen.</description><identifier>ISSN: 0002-9122</identifier><identifier>EISSN: 1537-2197</identifier><identifier>DOI: 10.2307/2656725</identifier><identifier>PMID: 10991903</identifier><identifier>CODEN: AJBOAA</identifier><language>eng</language><publisher>United States: Botanical Soc America</publisher><subject>atpB ; atpB gene ; Biological taxonomies ; Botany ; Codons ; Corolla ; Datasets ; Deoxyribonucleic acid ; DNA ; Flowers & plants ; Genera ; Genes ; Genetics ; Maesaceae ; Myrsinaceae ; ndhF ; ndhF gene ; Phylogenetics ; Phylogeny ; Plant morphology ; Primulaceae ; rbcL ; rbcL gene ; Systematics ; Taxa ; Theophrastaceae ; We they distinction</subject><ispartof>American journal of botany, 2000-09, Vol.87 (9), p.1325-1341</ispartof><rights>Copyright 2000 Botanical Society of America, Inc.</rights><rights>2000 Botanical Society of America</rights><rights>Copyright Botanical Society of America, Inc. Sep 2000</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4265-76e10f135fa70d0276d11214b79bffd4955585dce2d6434f767c9b5a7c0cd7163</citedby><cites>FETCH-LOGICAL-c4265-76e10f135fa70d0276d11214b79bffd4955585dce2d6434f767c9b5a7c0cd7163</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/2656725$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/2656725$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,58213,58446</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10991903$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kallersjo, Mari</creatorcontrib><creatorcontrib>Bergqvist, Gullevi</creatorcontrib><creatorcontrib>Anderberg, Arne A</creatorcontrib><title>Generic realignment in primuloid families of the Ericales s.l.: a phylogenetic analysis based on DNA sequences from three chloroplast genes and morphology</title><title>American journal of botany</title><addtitle>Am J Bot</addtitle><description>The phylogenetic interrelationships in Primulaceae, Myrsinaceae, and Theophrastaceae were investigated using DNA sequence data from the chloroplast genes atpB, ndhF, and rbcL. The three genes were analyzed separately, together, and in combination with morphology, using parsimony jackknifing. The sequence data are further explored by analyses of first and second codon position only, third positions only, and transversions only. The results show that all codon positions contribute group support to the ndhF tree, whereas third codon positions provide most of the structure in the atpB and rbcL trees. Analyzed separately, transversions in atpB and rbcL have little structure, whereas in ndhF they produce a well-resolved tree. We conclude that the most informative and robust results are obtained from analyses with all codon positions included and that the tree resulting from the combined analysis of all available data provides the best estimate of phylogeny. The results show that Maesa is sister to all other taxa from the three families. Theophrastaceae are well supported, but both Myrsinaceae and Primulaceae are paraphyletic. We conclude that four families should be recognized, Maesaceae, Theophrastaceae, Primulaceae, and Myrsinaceae. For all families to be monophyletic, Samolus was transferred to Theophrastaceae, and Lysimachia, Anagallis, Trientalis, Glaux, Asterolinon, and Pelletiera were moved to the Myrsinaceae together with the genera Coris, Ardisiandra, and Cyclamen.</description><subject>atpB</subject><subject>atpB gene</subject><subject>Biological taxonomies</subject><subject>Botany</subject><subject>Codons</subject><subject>Corolla</subject><subject>Datasets</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Flowers & plants</subject><subject>Genera</subject><subject>Genes</subject><subject>Genetics</subject><subject>Maesaceae</subject><subject>Myrsinaceae</subject><subject>ndhF</subject><subject>ndhF gene</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant morphology</subject><subject>Primulaceae</subject><subject>rbcL</subject><subject>rbcL gene</subject><subject>Systematics</subject><subject>Taxa</subject><subject>Theophrastaceae</subject><subject>We they distinction</subject><issn>0002-9122</issn><issn>1537-2197</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><recordid>eNp9kc9u1DAQhy0EotuCeAGELA7llMV24jjmtpRSQBVc4Gw5_rPxyom3dqIor8LT4u2uKEKCkzXS9_vGMwPAC4zWpETsLalpzQh9BFaYlqwgmLPHYIUQIgXHhJyB85R2ueQVJ0_BGUacY47KFfh5YwYTnYLRSO-2Q2-GEboB7qPrJx-chlb2zjuTYLBw7Ay8zrT0uU5rv34HJdx3iw_brBmzRg7SL8kl2MpkNAwD_PB1A5O5m8ygcsjG0GdNNAaqzocY9l6mER7iKYc17EPcdyELl2fgiZU-meen9wL8-Hj9_epTcfvt5vPV5rZQVR67YLXByOKSWsmQRoTVGmOCq5bx1lpdcUppQ7UyRNdVWVlWM8VbKplCSjNclxfgzdG7jyF_M42id0kZ7-VgwpREwwjOVkwyeflfEjNGq6pmGXz9F7gLU8yrSYJg2jSk5M1DXxVDStFYcVi6jIvASByuKk5XzeSrk25qe6P_4I5nzEBxBGbnzfIvj9h8eU9weS98eeR3aQzxN__Q7zRn57bd7KIRqZfe5-5YzPPcMMHFvecXhYnAjQ</recordid><startdate>200009</startdate><enddate>200009</enddate><creator>Kallersjo, Mari</creator><creator>Bergqvist, Gullevi</creator><creator>Anderberg, Arne A</creator><general>Botanical Soc America</general><general>Botanical Society of America</general><general>Botanical Society of America, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope></search><sort><creationdate>200009</creationdate><title>Generic realignment in primuloid families of the Ericales s.l.: a phylogenetic analysis based on DNA sequences from three chloroplast genes and morphology</title><author>Kallersjo, Mari ; Bergqvist, Gullevi ; Anderberg, Arne A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4265-76e10f135fa70d0276d11214b79bffd4955585dce2d6434f767c9b5a7c0cd7163</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>atpB</topic><topic>atpB gene</topic><topic>Biological taxonomies</topic><topic>Botany</topic><topic>Codons</topic><topic>Corolla</topic><topic>Datasets</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Flowers & plants</topic><topic>Genera</topic><topic>Genes</topic><topic>Genetics</topic><topic>Maesaceae</topic><topic>Myrsinaceae</topic><topic>ndhF</topic><topic>ndhF gene</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant morphology</topic><topic>Primulaceae</topic><topic>rbcL</topic><topic>rbcL gene</topic><topic>Systematics</topic><topic>Taxa</topic><topic>Theophrastaceae</topic><topic>We they distinction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kallersjo, Mari</creatorcontrib><creatorcontrib>Bergqvist, Gullevi</creatorcontrib><creatorcontrib>Anderberg, Arne A</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>American journal of botany</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kallersjo, Mari</au><au>Bergqvist, Gullevi</au><au>Anderberg, Arne A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Generic realignment in primuloid families of the Ericales s.l.: a phylogenetic analysis based on DNA sequences from three chloroplast genes and morphology</atitle><jtitle>American journal of botany</jtitle><addtitle>Am J Bot</addtitle><date>2000-09</date><risdate>2000</risdate><volume>87</volume><issue>9</issue><spage>1325</spage><epage>1341</epage><pages>1325-1341</pages><issn>0002-9122</issn><eissn>1537-2197</eissn><coden>AJBOAA</coden><abstract>The phylogenetic interrelationships in Primulaceae, Myrsinaceae, and Theophrastaceae were investigated using DNA sequence data from the chloroplast genes atpB, ndhF, and rbcL. The three genes were analyzed separately, together, and in combination with morphology, using parsimony jackknifing. The sequence data are further explored by analyses of first and second codon position only, third positions only, and transversions only. The results show that all codon positions contribute group support to the ndhF tree, whereas third codon positions provide most of the structure in the atpB and rbcL trees. Analyzed separately, transversions in atpB and rbcL have little structure, whereas in ndhF they produce a well-resolved tree. We conclude that the most informative and robust results are obtained from analyses with all codon positions included and that the tree resulting from the combined analysis of all available data provides the best estimate of phylogeny. The results show that Maesa is sister to all other taxa from the three families. Theophrastaceae are well supported, but both Myrsinaceae and Primulaceae are paraphyletic. We conclude that four families should be recognized, Maesaceae, Theophrastaceae, Primulaceae, and Myrsinaceae. For all families to be monophyletic, Samolus was transferred to Theophrastaceae, and Lysimachia, Anagallis, Trientalis, Glaux, Asterolinon, and Pelletiera were moved to the Myrsinaceae together with the genera Coris, Ardisiandra, and Cyclamen.</abstract><cop>United States</cop><pub>Botanical Soc America</pub><pmid>10991903</pmid><doi>10.2307/2656725</doi><tpages>17</tpages></addata></record> |
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subjects | atpB atpB gene Biological taxonomies Botany Codons Corolla Datasets Deoxyribonucleic acid DNA Flowers & plants Genera Genes Genetics Maesaceae Myrsinaceae ndhF ndhF gene Phylogenetics Phylogeny Plant morphology Primulaceae rbcL rbcL gene Systematics Taxa Theophrastaceae We they distinction |
title | Generic realignment in primuloid families of the Ericales s.l.: a phylogenetic analysis based on DNA sequences from three chloroplast genes and morphology |
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