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Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences
Internal transcribed spacer (ITS-l) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.1.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classifica...
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Published in: | American journal of botany 1998-11, Vol.85 (11), p.1517-1530 |
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description | Internal transcribed spacer (ITS-l) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.1.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classification of Ferskova than to other classifications evaluated, although the inclusion of sect Lactuca subsect. Cyanicae is not supported. Therefore, exclusion of subsect Cyanicae from Lactuca sensu Ferakova is proposed. The amended genus contains the entire gene pool (sensu Harlan and De Wet) of cultivated lettuce (Lactuca satire). The position of the species in the amended classification corresponds to their position in the lettuce gene pool. In the ITS-1 phylogenies, a clade with L. sativa, L. serriola, L. dregeana, L. altaica, and L. aculeata represents the primary gene pool. L. virosa and L. saligna, branching off closest to this clade, encompass the secondary gene pool L. virosa is possibly of hybrid origin. The primary and secondary gene pool species are classified in sect. Lactuca subsect. Lactuca. The species L. quercina, L. viminea, L. sibirica, and L. tatarica, branching off next, represent the tertiary gene pool. They are classified in Lactuca sect. Lactucopsis, sect Phaenixopus, and sect Mulgedium, respectively, L. perennis and L. tenerrima, classified in sect. Lactuca subsect. Cyanicae, form clades with species from related genera and are not part of the lettuce gene pool. |
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M ; Guetta, Eli ; van de Wiel, Clemens C. M ; Vosman, Ben ; van den Berg, Ronald G</creator><creatorcontrib>Koopman, Wim J. M ; Guetta, Eli ; van de Wiel, Clemens C. M ; Vosman, Ben ; van den Berg, Ronald G</creatorcontrib><description>Internal transcribed spacer (ITS-l) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.1.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classification of Ferskova than to other classifications evaluated, although the inclusion of sect Lactuca subsect. Cyanicae is not supported. Therefore, exclusion of subsect Cyanicae from Lactuca sensu Ferakova is proposed. The amended genus contains the entire gene pool (sensu Harlan and De Wet) of cultivated lettuce (Lactuca satire). The position of the species in the amended classification corresponds to their position in the lettuce gene pool. In the ITS-1 phylogenies, a clade with L. sativa, L. serriola, L. dregeana, L. altaica, and L. aculeata represents the primary gene pool. L. virosa and L. saligna, branching off closest to this clade, encompass the secondary gene pool L. virosa is possibly of hybrid origin. The primary and secondary gene pool species are classified in sect. Lactuca subsect. Lactuca. The species L. quercina, L. viminea, L. sibirica, and L. tatarica, branching off next, represent the tertiary gene pool. They are classified in Lactuca sect. Lactucopsis, sect Phaenixopus, and sect Mulgedium, respectively, L. perennis and L. tenerrima, classified in sect. Lactuca subsect. Cyanicae, form clades with species from related genera and are not part of the lettuce gene pool.</description><identifier>ISSN: 0002-9122</identifier><identifier>EISSN: 1537-2197</identifier><identifier>DOI: 10.2307/2446479</identifier><identifier>PMID: 21680311</identifier><identifier>CODEN: AJBOAA</identifier><language>eng</language><publisher>United States: Botanical Soc America</publisher><subject>Asteraceae ; Biological taxonomies ; Botany ; Cichorium ; Datasets ; Deoxyribonucleic acid ; DNA ; Gene pool ; Genera ; Lactuca ; Lactuca aculeata ; Lactuca altaica ; Lactuca dregeana ; Lactuca quercina ; Lactuca saligna ; Lactuca sativa ; Lactuca serriola ; Lactuca sibirica ; Lactuca tatarica ; Lactuca viminea ; Lactuca virosa ; Lactuceae ; Lettuce ; Parsimony ; phylogenetic relationships ; Phylogenetics ; Phylogeny ; Plants ; ribosomal DNA internal transcribed spacer (ITS) ; Systematics ; Taraxacum ; Taxa</subject><ispartof>American journal of botany, 1998-11, Vol.85 (11), p.1517-1530</ispartof><rights>Copyright 1998 Botanical Society of America, Inc.</rights><rights>1998 Botanical Society of America</rights><rights>Copyright Botanical Society of America, Inc. Nov 1998</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4937-de1579f4c6b256f2984deba3c80c4d22f8ec94f7e75bf09b70667f985f05c1e23</citedby><cites>FETCH-LOGICAL-c4937-de1579f4c6b256f2984deba3c80c4d22f8ec94f7e75bf09b70667f985f05c1e23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/2446479$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/2446479$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,58238,58471</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21680311$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Koopman, Wim J. M</creatorcontrib><creatorcontrib>Guetta, Eli</creatorcontrib><creatorcontrib>van de Wiel, Clemens C. M</creatorcontrib><creatorcontrib>Vosman, Ben</creatorcontrib><creatorcontrib>van den Berg, Ronald G</creatorcontrib><title>Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences</title><title>American journal of botany</title><addtitle>Am J Bot</addtitle><description>Internal transcribed spacer (ITS-l) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.1.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classification of Ferskova than to other classifications evaluated, although the inclusion of sect Lactuca subsect. Cyanicae is not supported. Therefore, exclusion of subsect Cyanicae from Lactuca sensu Ferakova is proposed. The amended genus contains the entire gene pool (sensu Harlan and De Wet) of cultivated lettuce (Lactuca satire). The position of the species in the amended classification corresponds to their position in the lettuce gene pool. In the ITS-1 phylogenies, a clade with L. sativa, L. serriola, L. dregeana, L. altaica, and L. aculeata represents the primary gene pool. L. virosa and L. saligna, branching off closest to this clade, encompass the secondary gene pool L. virosa is possibly of hybrid origin. The primary and secondary gene pool species are classified in sect. Lactuca subsect. Lactuca. The species L. quercina, L. viminea, L. sibirica, and L. tatarica, branching off next, represent the tertiary gene pool. They are classified in Lactuca sect. Lactucopsis, sect Phaenixopus, and sect Mulgedium, respectively, L. perennis and L. tenerrima, classified in sect. Lactuca subsect. Cyanicae, form clades with species from related genera and are not part of the lettuce gene pool.</description><subject>Asteraceae</subject><subject>Biological taxonomies</subject><subject>Botany</subject><subject>Cichorium</subject><subject>Datasets</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Gene pool</subject><subject>Genera</subject><subject>Lactuca</subject><subject>Lactuca aculeata</subject><subject>Lactuca altaica</subject><subject>Lactuca dregeana</subject><subject>Lactuca quercina</subject><subject>Lactuca saligna</subject><subject>Lactuca sativa</subject><subject>Lactuca serriola</subject><subject>Lactuca sibirica</subject><subject>Lactuca tatarica</subject><subject>Lactuca viminea</subject><subject>Lactuca virosa</subject><subject>Lactuceae</subject><subject>Lettuce</subject><subject>Parsimony</subject><subject>phylogenetic relationships</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plants</subject><subject>ribosomal DNA internal transcribed spacer (ITS)</subject><subject>Systematics</subject><subject>Taraxacum</subject><subject>Taxa</subject><issn>0002-9122</issn><issn>1537-2197</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><recordid>eNp9kV1v0zAUhi0EYmUg_gBCFhcwLgI-Thzbl2UwNlQBEuPacpyT1lU-ip0o6r-fR8tASHBlHenx8x77JeQpsDc8Z_ItL4qykPoeWYDIZcZBy_tkwRjjmQbOT8ijGLdp1IXmD8kJh1KxHGBBuq-bfTusscfROxqwtaMf-rjxu0htN_RrurJunJylZ8s4YrAOLb6mcYfOY0L6-nAJa3orCZZWNqZh6OnV9bcM6PvPSxrxx4S9w_iYPGhsG_HJ8Twl3y8-XJ9fZqsvH6_Ol6vMFTqtXyMIqZvClRUXZcO1KmqsbO4Uc0XNeaPQ6aKRKEXVMF1JVpay0Uo0TDhAnp-SVwfvLgwpOo6m89Fh29oehykaJdOHQSnLRL78LwmSA1M8T-CLv8DtMIU-vcJwEEoKkf-R68IQY8DG7ILvbNgbYOa2KHMsKpHPj7qp6rC-4341k4DsAMy-xf2_PGb56V2KB5n4Zwd-G8ch_Pbd5R032_j1ZvYBTexs26Z0MPM8K2EAzE_RDXP_r4w</recordid><startdate>199811</startdate><enddate>199811</enddate><creator>Koopman, Wim J. M</creator><creator>Guetta, Eli</creator><creator>van de Wiel, Clemens C. M</creator><creator>Vosman, Ben</creator><creator>van den Berg, Ronald G</creator><general>Botanical Soc America</general><general>American Botanical Society</general><general>Botanical Society of America</general><general>Botanical Society of America, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope></search><sort><creationdate>199811</creationdate><title>Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences</title><author>Koopman, Wim J. M ; Guetta, Eli ; van de Wiel, Clemens C. M ; Vosman, Ben ; van den Berg, Ronald G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4937-de1579f4c6b256f2984deba3c80c4d22f8ec94f7e75bf09b70667f985f05c1e23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Asteraceae</topic><topic>Biological taxonomies</topic><topic>Botany</topic><topic>Cichorium</topic><topic>Datasets</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Gene pool</topic><topic>Genera</topic><topic>Lactuca</topic><topic>Lactuca aculeata</topic><topic>Lactuca altaica</topic><topic>Lactuca dregeana</topic><topic>Lactuca quercina</topic><topic>Lactuca saligna</topic><topic>Lactuca sativa</topic><topic>Lactuca serriola</topic><topic>Lactuca sibirica</topic><topic>Lactuca tatarica</topic><topic>Lactuca viminea</topic><topic>Lactuca virosa</topic><topic>Lactuceae</topic><topic>Lettuce</topic><topic>Parsimony</topic><topic>phylogenetic relationships</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plants</topic><topic>ribosomal DNA internal transcribed spacer (ITS)</topic><topic>Systematics</topic><topic>Taraxacum</topic><topic>Taxa</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Koopman, Wim J. M</creatorcontrib><creatorcontrib>Guetta, Eli</creatorcontrib><creatorcontrib>van de Wiel, Clemens C. M</creatorcontrib><creatorcontrib>Vosman, Ben</creatorcontrib><creatorcontrib>van den Berg, Ronald G</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>American journal of botany</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Koopman, Wim J. M</au><au>Guetta, Eli</au><au>van de Wiel, Clemens C. M</au><au>Vosman, Ben</au><au>van den Berg, Ronald G</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences</atitle><jtitle>American journal of botany</jtitle><addtitle>Am J Bot</addtitle><date>1998-11</date><risdate>1998</risdate><volume>85</volume><issue>11</issue><spage>1517</spage><epage>1530</epage><pages>1517-1530</pages><issn>0002-9122</issn><eissn>1537-2197</eissn><coden>AJBOAA</coden><abstract>Internal transcribed spacer (ITS-l) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.1.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classification of Ferskova than to other classifications evaluated, although the inclusion of sect Lactuca subsect. Cyanicae is not supported. Therefore, exclusion of subsect Cyanicae from Lactuca sensu Ferakova is proposed. The amended genus contains the entire gene pool (sensu Harlan and De Wet) of cultivated lettuce (Lactuca satire). The position of the species in the amended classification corresponds to their position in the lettuce gene pool. In the ITS-1 phylogenies, a clade with L. sativa, L. serriola, L. dregeana, L. altaica, and L. aculeata represents the primary gene pool. L. virosa and L. saligna, branching off closest to this clade, encompass the secondary gene pool L. virosa is possibly of hybrid origin. The primary and secondary gene pool species are classified in sect. Lactuca subsect. Lactuca. The species L. quercina, L. viminea, L. sibirica, and L. tatarica, branching off next, represent the tertiary gene pool. They are classified in Lactuca sect. Lactucopsis, sect Phaenixopus, and sect Mulgedium, respectively, L. perennis and L. tenerrima, classified in sect. Lactuca subsect. Cyanicae, form clades with species from related genera and are not part of the lettuce gene pool.</abstract><cop>United States</cop><pub>Botanical Soc America</pub><pmid>21680311</pmid><doi>10.2307/2446479</doi><tpages>14</tpages></addata></record> |
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subjects | Asteraceae Biological taxonomies Botany Cichorium Datasets Deoxyribonucleic acid DNA Gene pool Genera Lactuca Lactuca aculeata Lactuca altaica Lactuca dregeana Lactuca quercina Lactuca saligna Lactuca sativa Lactuca serriola Lactuca sibirica Lactuca tatarica Lactuca viminea Lactuca virosa Lactuceae Lettuce Parsimony phylogenetic relationships Phylogenetics Phylogeny Plants ribosomal DNA internal transcribed spacer (ITS) Systematics Taraxacum Taxa |
title | Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences |
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