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Ascorbate peroxidase-related (APx-R) is a new heme-containing protein functionally associated with ascorbate peroxidase but evolutionarily divergent
• Peroxidases are involved in several important processes, such as development and responses to environmental cues. In higher plants, most peroxidases are encoded by large, multigenic families that mainly originated from gene and chromosomal duplications. • Using phylogenetic, genomic and functional...
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Published in: | The New phytologist 2011-07, Vol.191 (1), p.234-250 |
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creator | Lazzarotto, Fernanda Teixeira, Felipe Karam Rosa, Silvia Barcelos Dunand, Christophe Fernandes, Claudia Lemelle de Vasconcelos Fontenele, Adilton Silveira, Joaquim Albenisio Gomes Verli, Hugo Margis, Rogério Margis-Pinheiro, Marcia |
description | • Peroxidases are involved in several important processes, such as development and responses to environmental cues. In higher plants, most peroxidases are encoded by large, multigenic families that mainly originated from gene and chromosomal duplications. • Using phylogenetic, genomic and functional analyses, we have identified and characterized a new class of putative heme peroxidases, called ascorbate peroxidase-related (APx-R), which arose specifically in the lineage of plants. • The APx-R protein is structurally related to the ascorbate peroxidases, although the active site contains many conserved substitutions. Unlike all other plant peroxidases, which are encoded by gene families, APx-R is encoded by a single-copy gene in virtually all the species analyzed. APx-R proteins are targeted to the chloroplast and can physically interact with chloroplastic APx proteins. APx-R-knockdown rice (Oryza sativa) plants presented delayed development and a disturbed steady state of the antioxidant system compared with wild type. Moreover, the accumulation of APx-R transcripts was modulated by drought, UV irradiation, cold, and aluminum exposure in rice, suggesting the involvement of APx-R in the environmental stress response. • Our results reveal the existence of a new class of heme peroxidase which seems to play a role in the antioxidant system in plants, probably by modulating the activity of chloroplastic APx proteins. |
doi_str_mv | 10.1111/j.1469-8137.2011.03659.x |
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In higher plants, most peroxidases are encoded by large, multigenic families that mainly originated from gene and chromosomal duplications. • Using phylogenetic, genomic and functional analyses, we have identified and characterized a new class of putative heme peroxidases, called ascorbate peroxidase-related (APx-R), which arose specifically in the lineage of plants. • The APx-R protein is structurally related to the ascorbate peroxidases, although the active site contains many conserved substitutions. Unlike all other plant peroxidases, which are encoded by gene families, APx-R is encoded by a single-copy gene in virtually all the species analyzed. APx-R proteins are targeted to the chloroplast and can physically interact with chloroplastic APx proteins. APx-R-knockdown rice (Oryza sativa) plants presented delayed development and a disturbed steady state of the antioxidant system compared with wild type. Moreover, the accumulation of APx-R transcripts was modulated by drought, UV irradiation, cold, and aluminum exposure in rice, suggesting the involvement of APx-R in the environmental stress response. • Our results reveal the existence of a new class of heme peroxidase which seems to play a role in the antioxidant system in plants, probably by modulating the activity of chloroplastic APx proteins.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/j.1469-8137.2011.03659.x</identifier><identifier>PMID: 21352234</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Aluminium ; Aluminum ; Amino Acid Sequence ; antioxidant ; Antioxidants ; Antioxidants - metabolism ; Arabidopsis - genetics ; ascorbate peroxidase ; Ascorbate Peroxidases ; Ascorbic acid ; Catalytic Domain ; Chloroplasts ; Chloroplasts - enzymology ; Chromosomes ; cold ; Conserved Sequence ; Dimerization ; Divergence ; Drought ; Environmental stress ; Evolution, Molecular ; Gene families ; Genes ; Genetic loci ; Genomics ; H2O2 scavenging ; Heme ; heme peroxidase ; Irradiation ; L-Ascorbate peroxidase ; Mitochondria - enzymology ; Molecular Sequence Data ; New class ; New classes ; Oryza - enzymology ; Oryza - genetics ; Oryza - growth & development ; Oryza sativa ; Peroxidase ; Peroxidases - chemistry ; Peroxidases - genetics ; Peroxidases - physiology ; Phylogenetics ; Phylogeny ; Plant interaction ; Plant Proteins - chemistry ; Plant Proteins - genetics ; Plant Proteins - physiology ; Plants ; Populus - genetics ; Protein isoforms ; Proteins ; redox ; Rice ; RNA, Messenger - metabolism ; Sequence Alignment ; single copy gene ; stress response ; Stress, Physiological ; Ultraviolet radiation</subject><ispartof>The New phytologist, 2011-07, Vol.191 (1), p.234-250</ispartof><rights>Copyright © 2011 New Phytologist Trust</rights><rights>2011 The Authors. New Phytologist © 2011 New Phytologist Trust</rights><rights>2011 The Authors. New Phytologist © 2011 New Phytologist Trust.</rights><rights>Copyright Wiley Subscription Services, Inc. Jul 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4929-3fb4c757bfabab7462573b1f2c505bfccf6e6c5f628c1d9a7fb293bf901216e3</citedby><cites>FETCH-LOGICAL-c4929-3fb4c757bfabab7462573b1f2c505bfccf6e6c5f628c1d9a7fb293bf901216e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/20869157$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/20869157$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,58238,58471</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21352234$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lazzarotto, Fernanda</creatorcontrib><creatorcontrib>Teixeira, Felipe Karam</creatorcontrib><creatorcontrib>Rosa, Silvia Barcelos</creatorcontrib><creatorcontrib>Dunand, Christophe</creatorcontrib><creatorcontrib>Fernandes, Claudia Lemelle</creatorcontrib><creatorcontrib>de Vasconcelos Fontenele, Adilton</creatorcontrib><creatorcontrib>Silveira, Joaquim Albenisio Gomes</creatorcontrib><creatorcontrib>Verli, Hugo</creatorcontrib><creatorcontrib>Margis, Rogério</creatorcontrib><creatorcontrib>Margis-Pinheiro, Marcia</creatorcontrib><title>Ascorbate peroxidase-related (APx-R) is a new heme-containing protein functionally associated with ascorbate peroxidase but evolutionarily divergent</title><title>The New phytologist</title><addtitle>New Phytol</addtitle><description>• Peroxidases are involved in several important processes, such as development and responses to environmental cues. In higher plants, most peroxidases are encoded by large, multigenic families that mainly originated from gene and chromosomal duplications. • Using phylogenetic, genomic and functional analyses, we have identified and characterized a new class of putative heme peroxidases, called ascorbate peroxidase-related (APx-R), which arose specifically in the lineage of plants. • The APx-R protein is structurally related to the ascorbate peroxidases, although the active site contains many conserved substitutions. Unlike all other plant peroxidases, which are encoded by gene families, APx-R is encoded by a single-copy gene in virtually all the species analyzed. APx-R proteins are targeted to the chloroplast and can physically interact with chloroplastic APx proteins. APx-R-knockdown rice (Oryza sativa) plants presented delayed development and a disturbed steady state of the antioxidant system compared with wild type. Moreover, the accumulation of APx-R transcripts was modulated by drought, UV irradiation, cold, and aluminum exposure in rice, suggesting the involvement of APx-R in the environmental stress response. • Our results reveal the existence of a new class of heme peroxidase which seems to play a role in the antioxidant system in plants, probably by modulating the activity of chloroplastic APx proteins.</description><subject>Aluminium</subject><subject>Aluminum</subject><subject>Amino Acid Sequence</subject><subject>antioxidant</subject><subject>Antioxidants</subject><subject>Antioxidants - metabolism</subject><subject>Arabidopsis - genetics</subject><subject>ascorbate peroxidase</subject><subject>Ascorbate Peroxidases</subject><subject>Ascorbic acid</subject><subject>Catalytic Domain</subject><subject>Chloroplasts</subject><subject>Chloroplasts - enzymology</subject><subject>Chromosomes</subject><subject>cold</subject><subject>Conserved Sequence</subject><subject>Dimerization</subject><subject>Divergence</subject><subject>Drought</subject><subject>Environmental stress</subject><subject>Evolution, Molecular</subject><subject>Gene families</subject><subject>Genes</subject><subject>Genetic loci</subject><subject>Genomics</subject><subject>H2O2 scavenging</subject><subject>Heme</subject><subject>heme peroxidase</subject><subject>Irradiation</subject><subject>L-Ascorbate peroxidase</subject><subject>Mitochondria - enzymology</subject><subject>Molecular Sequence Data</subject><subject>New class</subject><subject>New classes</subject><subject>Oryza - enzymology</subject><subject>Oryza - genetics</subject><subject>Oryza - growth & development</subject><subject>Oryza sativa</subject><subject>Peroxidase</subject><subject>Peroxidases - chemistry</subject><subject>Peroxidases - genetics</subject><subject>Peroxidases - physiology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant interaction</subject><subject>Plant Proteins - chemistry</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - physiology</subject><subject>Plants</subject><subject>Populus - genetics</subject><subject>Protein isoforms</subject><subject>Proteins</subject><subject>redox</subject><subject>Rice</subject><subject>RNA, Messenger - metabolism</subject><subject>Sequence Alignment</subject><subject>single copy gene</subject><subject>stress response</subject><subject>Stress, Physiological</subject><subject>Ultraviolet radiation</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><recordid>eNqNks1u1DAUhS0EosPAIwCWWACLBNtJnGTBYlRRilRBBUViZ9nO9dRRJh7spDPzHn1gnEkpEmzwxn_fOVfXxwhhSlIax7s2pTmvk4pmZcoIpSnJeFGn-wdocX_xEC0IYVXCc_7jBD0JoSWE1AVnj9EJo1nBWJYv0O0qaOeVHABvwbu9bWSAxEMXTxr8ZnW5T76-xTZgiXvY4WvYQKJdP0jb236Nt94NYHtsxl4P1vWy6w5YhuC0PRrs7HAd9_-WwGocMNy4bjzKvI26xt6AX0M_PEWPjOwCPLubl-jq7MPV6Xly8eXjp9PVRaLzmtVJZlSuy6JURiqpypyzoswUNUwXpFBGa8OB68JwVmna1LI0itWZMjWhjHLIluj1bBu7-DlCGMTGBg1dJ3twYxBVWVWU5xWJ5Ku_yNaNPnYbBCsoLymp6ERVM6W9C8GDEVtvN9IfBCViyk20YopHTPGIKTdxzE3so_TFXYFRbaC5F_4OKgLvZ2BnOzj8t7H4fHk-raL--axvw-D8H39S8ZrGZ1uil_O9kU7ItbdBfP8WnfL4aQjjNM9-ARf0vL8</recordid><startdate>201107</startdate><enddate>201107</enddate><creator>Lazzarotto, Fernanda</creator><creator>Teixeira, Felipe Karam</creator><creator>Rosa, Silvia Barcelos</creator><creator>Dunand, Christophe</creator><creator>Fernandes, Claudia Lemelle</creator><creator>de Vasconcelos Fontenele, Adilton</creator><creator>Silveira, Joaquim Albenisio Gomes</creator><creator>Verli, Hugo</creator><creator>Margis, Rogério</creator><creator>Margis-Pinheiro, Marcia</creator><general>Blackwell Publishing Ltd</general><general>John Wiley & Sons</general><general>Wiley Subscription Services, Inc</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201107</creationdate><title>Ascorbate peroxidase-related (APx-R) is a new heme-containing protein functionally associated with ascorbate peroxidase but evolutionarily divergent</title><author>Lazzarotto, Fernanda ; Teixeira, Felipe Karam ; Rosa, Silvia Barcelos ; Dunand, Christophe ; Fernandes, Claudia Lemelle ; de Vasconcelos Fontenele, Adilton ; Silveira, Joaquim Albenisio Gomes ; Verli, Hugo ; Margis, Rogério ; Margis-Pinheiro, Marcia</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4929-3fb4c757bfabab7462573b1f2c505bfccf6e6c5f628c1d9a7fb293bf901216e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Aluminium</topic><topic>Aluminum</topic><topic>Amino Acid Sequence</topic><topic>antioxidant</topic><topic>Antioxidants</topic><topic>Antioxidants - metabolism</topic><topic>Arabidopsis - genetics</topic><topic>ascorbate peroxidase</topic><topic>Ascorbate Peroxidases</topic><topic>Ascorbic acid</topic><topic>Catalytic Domain</topic><topic>Chloroplasts</topic><topic>Chloroplasts - enzymology</topic><topic>Chromosomes</topic><topic>cold</topic><topic>Conserved Sequence</topic><topic>Dimerization</topic><topic>Divergence</topic><topic>Drought</topic><topic>Environmental stress</topic><topic>Evolution, Molecular</topic><topic>Gene families</topic><topic>Genes</topic><topic>Genetic loci</topic><topic>Genomics</topic><topic>H2O2 scavenging</topic><topic>Heme</topic><topic>heme peroxidase</topic><topic>Irradiation</topic><topic>L-Ascorbate peroxidase</topic><topic>Mitochondria - enzymology</topic><topic>Molecular Sequence Data</topic><topic>New class</topic><topic>New classes</topic><topic>Oryza - enzymology</topic><topic>Oryza - genetics</topic><topic>Oryza - growth & development</topic><topic>Oryza sativa</topic><topic>Peroxidase</topic><topic>Peroxidases - 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Academic</collection><jtitle>The New phytologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lazzarotto, Fernanda</au><au>Teixeira, Felipe Karam</au><au>Rosa, Silvia Barcelos</au><au>Dunand, Christophe</au><au>Fernandes, Claudia Lemelle</au><au>de Vasconcelos Fontenele, Adilton</au><au>Silveira, Joaquim Albenisio Gomes</au><au>Verli, Hugo</au><au>Margis, Rogério</au><au>Margis-Pinheiro, Marcia</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Ascorbate peroxidase-related (APx-R) is a new heme-containing protein functionally associated with ascorbate peroxidase but evolutionarily divergent</atitle><jtitle>The New phytologist</jtitle><addtitle>New Phytol</addtitle><date>2011-07</date><risdate>2011</risdate><volume>191</volume><issue>1</issue><spage>234</spage><epage>250</epage><pages>234-250</pages><issn>0028-646X</issn><eissn>1469-8137</eissn><abstract>• Peroxidases are involved in several important processes, such as development and responses to environmental cues. In higher plants, most peroxidases are encoded by large, multigenic families that mainly originated from gene and chromosomal duplications. • Using phylogenetic, genomic and functional analyses, we have identified and characterized a new class of putative heme peroxidases, called ascorbate peroxidase-related (APx-R), which arose specifically in the lineage of plants. • The APx-R protein is structurally related to the ascorbate peroxidases, although the active site contains many conserved substitutions. Unlike all other plant peroxidases, which are encoded by gene families, APx-R is encoded by a single-copy gene in virtually all the species analyzed. APx-R proteins are targeted to the chloroplast and can physically interact with chloroplastic APx proteins. APx-R-knockdown rice (Oryza sativa) plants presented delayed development and a disturbed steady state of the antioxidant system compared with wild type. Moreover, the accumulation of APx-R transcripts was modulated by drought, UV irradiation, cold, and aluminum exposure in rice, suggesting the involvement of APx-R in the environmental stress response. • Our results reveal the existence of a new class of heme peroxidase which seems to play a role in the antioxidant system in plants, probably by modulating the activity of chloroplastic APx proteins.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>21352234</pmid><doi>10.1111/j.1469-8137.2011.03659.x</doi><tpages>17</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Aluminium Aluminum Amino Acid Sequence antioxidant Antioxidants Antioxidants - metabolism Arabidopsis - genetics ascorbate peroxidase Ascorbate Peroxidases Ascorbic acid Catalytic Domain Chloroplasts Chloroplasts - enzymology Chromosomes cold Conserved Sequence Dimerization Divergence Drought Environmental stress Evolution, Molecular Gene families Genes Genetic loci Genomics H2O2 scavenging Heme heme peroxidase Irradiation L-Ascorbate peroxidase Mitochondria - enzymology Molecular Sequence Data New class New classes Oryza - enzymology Oryza - genetics Oryza - growth & development Oryza sativa Peroxidase Peroxidases - chemistry Peroxidases - genetics Peroxidases - physiology Phylogenetics Phylogeny Plant interaction Plant Proteins - chemistry Plant Proteins - genetics Plant Proteins - physiology Plants Populus - genetics Protein isoforms Proteins redox Rice RNA, Messenger - metabolism Sequence Alignment single copy gene stress response Stress, Physiological Ultraviolet radiation |
title | Ascorbate peroxidase-related (APx-R) is a new heme-containing protein functionally associated with ascorbate peroxidase but evolutionarily divergent |
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