Phylogenetic relationship of Lotus uliginosus symbionts with bradyrhizobia nodulating genistoid legumes

• Published in: FEMS microbiology ecology 2012-02, Vol.79 (2), p.454-564
• Main Authors: Lorite, María J., Videira e Castro, Isabel, Muñoz, Socorro, Sanjuán, Juan
• Format: Article
• Language: English
• Subjects: Animal, plant and microbial ecology; Animals; Bacteriology; Base Sequence; Biological and medical sciences; Bradyrhizobium; Bradyrhizobium - classification; Bradyrhizobium - genetics; Bradyrhizobium - physiology; DNA, Bacterial; Ecology; Fabaceae - microbiology; Fabaceae - physiology; Fertility; Fundamental and applied biological sciences. Psychology; Genetic diversity; Genetic Variation; Glycine max - microbiology; Glycine max - physiology; Legumes; Lotus - microbiology; Lotus - physiology; Lupinus - microbiology; Lupinus - physiology; Microbial ecology; Microbiology; Miscellaneous; Molecular Sequence Data; Nitrogen fixation; Nitrogen Fixation - physiology; Pasture; Phylogeny; Plant Roots - microbiology; Polymerase Chain Reaction; Polymorphism, Restriction Fragment Length; Portugal; Portuguese rhizobia; Sequence Analysis, DNA; Symbiosis; Symbiosis - physiology; Various environments (extraatmospheric space, air, water)
• ISSN: 0168-6496; 1574-6941
• DOI: 10.1111/j.1574-6941.2011.01230.x

Abstract L otus species are legumes with potential for pastures in soils with low-fertility and environmental constraints. The aim of this work was to characterize bacteria that establish efficient nitrogen-fixing symbiosis with the forage species Lotus uliginosus. A total of 39 isolates were obtained from nodules of L. uliginosus naturally growing in two different locations of Portugal. Molecular identification of the isolates plus the commercial inoculant strain NZP2039 was performed by REP–PCR, 16S rRNA RFLP, and 16S rRNA, glnII and recA sequence analyses. Limited genetic diversity was found among the L. uliginosus symbionts, which showed a close phylogenetic relationship with the species Bradyrhizobium japonicum. The symbiotic nifH, nodA and nodC gene sequences were closely related with the corresponding genes of various Bradyrhizobium strains isolated from Lupinus and other genistoid legumes and therefore were phylogenetically separated from other Lotus spp. rhizobia. The L. uliginosus bradyrhizobia were able to nodulate and fix nitrogen in association with L. uliginosus, could nodulate Lotus corniculatus with generally poor nitrogen-fixing efficiency, formed nonfixing nodules in Lotus tenuis and Lupinus luteus roots and were unable to nodulate Glycine soja or Glycine max. Thus, L. uliginosus rhizobia seem closely related to B. japonicum biovar genistearum strains.