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Glutathione Biosynthesis in Bacteria by Bifunctional GshF Is Driven by a Modular Structure Featuring a Novel Hybrid ATP-Grasp Fold
Glutathione is an intracellular redox-active tripeptide thiol with a central role in cellular physiology across all kingdoms of life. Glutathione biosynthesis has been traditionally viewed as a conserved process relying on the sequential activity of two separate ligases, but recently, an enzyme (Gsh...
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Published in: | Journal of molecular biology 2012-03, Vol.416 (4), p.486-494 |
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description | Glutathione is an intracellular redox-active tripeptide thiol with a central role in cellular physiology across all kingdoms of life. Glutathione biosynthesis has been traditionally viewed as a conserved process relying on the sequential activity of two separate ligases, but recently, an enzyme (GshF) that unifies both necessary reactions in one platform has been identified and characterized in a number of pathogenic and free-living bacteria. Here, we report crystal structures of two prototypic GshF enzymes from Streptococcus agalactiae and Pasteurella multocida in an effort to shed light onto the structural determinants underlying their bifunctionality and to provide a structural framework for the plethora of biochemical and mutagenesis studies available for these enzymes. Our structures reveal how a canonical bacterial GshA module that catalyzes the condensation of l-glutamate and l-cysteine to γ-glutamylcysteine is linked to a novel ATP-grasp-like module responsible for the ensuing formation of glutathione from γ-glutamylcysteine and glycine. Notably, we identify an unprecedented subdomain in the ATP-grasp module of GshF at the interface of the GshF dimer, which is poised to mediate intersubunit communication and allosteric regulation of enzymatic activity. Comparison of the two GshF structures and mapping of structure–function relationships reveal that the bifunctional GshF structural platform operates as a dynamic dimeric assembly.
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► Structural snapshots of prototypic bifunctional glutathione synthetases. ► GshF features modular dimeric structures with intrinsic interdomain communication. ► Enzymatic platforms accommodating two ligase activities. |
doi_str_mv | 10.1016/j.jmb.2011.12.046 |
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► Structural snapshots of prototypic bifunctional glutathione synthetases. ► GshF features modular dimeric structures with intrinsic interdomain communication. ► Enzymatic platforms accommodating two ligase activities.</description><identifier>ISSN: 0022-2836</identifier><identifier>EISSN: 1089-8638</identifier><identifier>DOI: 10.1016/j.jmb.2011.12.046</identifier><identifier>PMID: 22226834</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Adenosine Triphosphate - chemistry ; Allosteric properties ; Amino Acid Sequence ; ATP-grasp ; bifunctional enzymes ; Communication ; Condensation ; Crystal structure ; Crystallography, X-Ray ; cyanophycin synthetase ; Cysteine - metabolism ; Dipeptides - metabolism ; Enzymatic activity ; gamma -Glutamylcysteine ; Glutamate-Cysteine Ligase - chemistry ; Glutamic acid ; Glutamic Acid - metabolism ; Glutathione ; Glutathione - biosynthesis ; Glutathione Synthase - chemistry ; Glycine ; Glycine - metabolism ; GshF ; Hybrids ; Mapping ; Models, Molecular ; Molecular Sequence Data ; Mutagenesis ; Pasteurella multocida ; Pasteurella multocida - enzymology ; Protein Conformation ; Streptococcus agalactiae ; Streptococcus agalactiae - enzymology ; Structure-function relationships ; Thiols</subject><ispartof>Journal of molecular biology, 2012-03, Vol.416 (4), p.486-494</ispartof><rights>2012 Elsevier Ltd</rights><rights>Copyright © 2012 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c384t-354195d8eb397041bb808b4697b9184d882cbd0c28f85e4ce04ce85aa873b1e63</citedby><cites>FETCH-LOGICAL-c384t-354195d8eb397041bb808b4697b9184d882cbd0c28f85e4ce04ce85aa873b1e63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22226834$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Stout, Jan</creatorcontrib><creatorcontrib>Vos, Dirk De</creatorcontrib><creatorcontrib>Vergauwen, Bjorn</creatorcontrib><creatorcontrib>Savvides, Savvas N.</creatorcontrib><title>Glutathione Biosynthesis in Bacteria by Bifunctional GshF Is Driven by a Modular Structure Featuring a Novel Hybrid ATP-Grasp Fold</title><title>Journal of molecular biology</title><addtitle>J Mol Biol</addtitle><description>Glutathione is an intracellular redox-active tripeptide thiol with a central role in cellular physiology across all kingdoms of life. Glutathione biosynthesis has been traditionally viewed as a conserved process relying on the sequential activity of two separate ligases, but recently, an enzyme (GshF) that unifies both necessary reactions in one platform has been identified and characterized in a number of pathogenic and free-living bacteria. Here, we report crystal structures of two prototypic GshF enzymes from Streptococcus agalactiae and Pasteurella multocida in an effort to shed light onto the structural determinants underlying their bifunctionality and to provide a structural framework for the plethora of biochemical and mutagenesis studies available for these enzymes. Our structures reveal how a canonical bacterial GshA module that catalyzes the condensation of l-glutamate and l-cysteine to γ-glutamylcysteine is linked to a novel ATP-grasp-like module responsible for the ensuing formation of glutathione from γ-glutamylcysteine and glycine. Notably, we identify an unprecedented subdomain in the ATP-grasp module of GshF at the interface of the GshF dimer, which is poised to mediate intersubunit communication and allosteric regulation of enzymatic activity. Comparison of the two GshF structures and mapping of structure–function relationships reveal that the bifunctional GshF structural platform operates as a dynamic dimeric assembly.
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► Structural snapshots of prototypic bifunctional glutathione synthetases. ► GshF features modular dimeric structures with intrinsic interdomain communication. ► Enzymatic platforms accommodating two ligase activities.</description><subject>Adenosine Triphosphate - chemistry</subject><subject>Allosteric properties</subject><subject>Amino Acid Sequence</subject><subject>ATP-grasp</subject><subject>bifunctional enzymes</subject><subject>Communication</subject><subject>Condensation</subject><subject>Crystal structure</subject><subject>Crystallography, X-Ray</subject><subject>cyanophycin synthetase</subject><subject>Cysteine - metabolism</subject><subject>Dipeptides - metabolism</subject><subject>Enzymatic activity</subject><subject>gamma -Glutamylcysteine</subject><subject>Glutamate-Cysteine Ligase - chemistry</subject><subject>Glutamic acid</subject><subject>Glutamic Acid - metabolism</subject><subject>Glutathione</subject><subject>Glutathione - biosynthesis</subject><subject>Glutathione Synthase - chemistry</subject><subject>Glycine</subject><subject>Glycine - metabolism</subject><subject>GshF</subject><subject>Hybrids</subject><subject>Mapping</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Mutagenesis</subject><subject>Pasteurella multocida</subject><subject>Pasteurella multocida - enzymology</subject><subject>Protein Conformation</subject><subject>Streptococcus agalactiae</subject><subject>Streptococcus agalactiae - enzymology</subject><subject>Structure-function relationships</subject><subject>Thiols</subject><issn>0022-2836</issn><issn>1089-8638</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><recordid>eNp9kEtvEzEURi0EoqHwA9gg71jN4Nc4HrHqg6SVSovUdm35cUMcTcbB9kTKll-OoxSWWLLu4jv3k-5B6CMlLSVUftm0m61tGaG0pawlQr5CM0pU3yjJ1Ws0I4Sxhikuz9C7nDeEkI4L9Radsfqk4mKGfi-HqZiyDnEEfBliPoxlDTlkHEZ8aVyBFAy2h5qtptGVypkBL_N6gW8zvk5hD-MxNvh79NNgEn4saXJlSoAXYOoM48-a3sc9DPjmYFPw-OLpR7NMJu_wIg7-PXqzMkOGDy_zHD0vvj1d3TR3D8vbq4u7xnElSsM7QfvOK7C8nxNBrVVEWSH7ue2pEl4p5qwnjqmV6kA4IPWrzhg155aC5Ofo86l3l-KvCXLR25AdDIMZIU5Z91JR2XNBK0lPpEsx5wQrvUtha9JBU6KP5vVGV_P6aF5Tpqv5uvPppX2yW_D_Nv6qrsDXEwD1xn2ApLMLMDrwIYEr2sfwn_o_zJST7Q</recordid><startdate>20120302</startdate><enddate>20120302</enddate><creator>Stout, Jan</creator><creator>Vos, Dirk De</creator><creator>Vergauwen, Bjorn</creator><creator>Savvides, Savvas N.</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20120302</creationdate><title>Glutathione Biosynthesis in Bacteria by Bifunctional GshF Is Driven by a Modular Structure Featuring a Novel Hybrid ATP-Grasp Fold</title><author>Stout, Jan ; Vos, Dirk De ; Vergauwen, Bjorn ; Savvides, Savvas N.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c384t-354195d8eb397041bb808b4697b9184d882cbd0c28f85e4ce04ce85aa873b1e63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Adenosine Triphosphate - chemistry</topic><topic>Allosteric properties</topic><topic>Amino Acid Sequence</topic><topic>ATP-grasp</topic><topic>bifunctional enzymes</topic><topic>Communication</topic><topic>Condensation</topic><topic>Crystal structure</topic><topic>Crystallography, X-Ray</topic><topic>cyanophycin synthetase</topic><topic>Cysteine - metabolism</topic><topic>Dipeptides - metabolism</topic><topic>Enzymatic activity</topic><topic>gamma -Glutamylcysteine</topic><topic>Glutamate-Cysteine Ligase - chemistry</topic><topic>Glutamic acid</topic><topic>Glutamic Acid - metabolism</topic><topic>Glutathione</topic><topic>Glutathione - biosynthesis</topic><topic>Glutathione Synthase - chemistry</topic><topic>Glycine</topic><topic>Glycine - metabolism</topic><topic>GshF</topic><topic>Hybrids</topic><topic>Mapping</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Mutagenesis</topic><topic>Pasteurella multocida</topic><topic>Pasteurella multocida - enzymology</topic><topic>Protein Conformation</topic><topic>Streptococcus agalactiae</topic><topic>Streptococcus agalactiae - enzymology</topic><topic>Structure-function relationships</topic><topic>Thiols</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Stout, Jan</creatorcontrib><creatorcontrib>Vos, Dirk De</creatorcontrib><creatorcontrib>Vergauwen, Bjorn</creatorcontrib><creatorcontrib>Savvides, Savvas N.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Journal of molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Stout, Jan</au><au>Vos, Dirk De</au><au>Vergauwen, Bjorn</au><au>Savvides, Savvas N.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Glutathione Biosynthesis in Bacteria by Bifunctional GshF Is Driven by a Modular Structure Featuring a Novel Hybrid ATP-Grasp Fold</atitle><jtitle>Journal of molecular biology</jtitle><addtitle>J Mol Biol</addtitle><date>2012-03-02</date><risdate>2012</risdate><volume>416</volume><issue>4</issue><spage>486</spage><epage>494</epage><pages>486-494</pages><issn>0022-2836</issn><eissn>1089-8638</eissn><abstract>Glutathione is an intracellular redox-active tripeptide thiol with a central role in cellular physiology across all kingdoms of life. Glutathione biosynthesis has been traditionally viewed as a conserved process relying on the sequential activity of two separate ligases, but recently, an enzyme (GshF) that unifies both necessary reactions in one platform has been identified and characterized in a number of pathogenic and free-living bacteria. Here, we report crystal structures of two prototypic GshF enzymes from Streptococcus agalactiae and Pasteurella multocida in an effort to shed light onto the structural determinants underlying their bifunctionality and to provide a structural framework for the plethora of biochemical and mutagenesis studies available for these enzymes. Our structures reveal how a canonical bacterial GshA module that catalyzes the condensation of l-glutamate and l-cysteine to γ-glutamylcysteine is linked to a novel ATP-grasp-like module responsible for the ensuing formation of glutathione from γ-glutamylcysteine and glycine. Notably, we identify an unprecedented subdomain in the ATP-grasp module of GshF at the interface of the GshF dimer, which is poised to mediate intersubunit communication and allosteric regulation of enzymatic activity. Comparison of the two GshF structures and mapping of structure–function relationships reveal that the bifunctional GshF structural platform operates as a dynamic dimeric assembly.
[Display omitted]
► Structural snapshots of prototypic bifunctional glutathione synthetases. ► GshF features modular dimeric structures with intrinsic interdomain communication. ► Enzymatic platforms accommodating two ligase activities.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>22226834</pmid><doi>10.1016/j.jmb.2011.12.046</doi><tpages>9</tpages></addata></record> |
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subjects | Adenosine Triphosphate - chemistry Allosteric properties Amino Acid Sequence ATP-grasp bifunctional enzymes Communication Condensation Crystal structure Crystallography, X-Ray cyanophycin synthetase Cysteine - metabolism Dipeptides - metabolism Enzymatic activity gamma -Glutamylcysteine Glutamate-Cysteine Ligase - chemistry Glutamic acid Glutamic Acid - metabolism Glutathione Glutathione - biosynthesis Glutathione Synthase - chemistry Glycine Glycine - metabolism GshF Hybrids Mapping Models, Molecular Molecular Sequence Data Mutagenesis Pasteurella multocida Pasteurella multocida - enzymology Protein Conformation Streptococcus agalactiae Streptococcus agalactiae - enzymology Structure-function relationships Thiols |
title | Glutathione Biosynthesis in Bacteria by Bifunctional GshF Is Driven by a Modular Structure Featuring a Novel Hybrid ATP-Grasp Fold |
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