Towards structural determination of the ComX pheromone: Synthetic studies on peptides containing geranyltryptophan

• Published in: Bioscience, biotechnology, and biochemistry biotechnology, and biochemistry, 2004-11, Vol.68 (11), p.2374-2387
• Main Authors: Okada, M. (Nagoya Univ. (Japan)), Sato, I, Cho, S.J, Suzuki, Y, Ojika, M, Dubnau, D, Sakagami, Y
• Format: Article
• Language: English
• Subjects: BACILLUS; Bacillus subtilis; Bacillus subtilis - metabolism; Bacterial Proteins - chemical synthesis; Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Biological and medical sciences; CHEMICAL REAGENTS; Chromatography, High Pressure Liquid; Chromatography, Liquid; ComX; Escherichia coli - metabolism; Fundamental and applied biological sciences. Psychology; Indicators and Reagents; Magnetic Resonance Spectroscopy; PEPTIDES; Peptides - chemical synthesis; PHEROMONES; Pheromones - chemical synthesis; Pheromones - chemistry; Pheromones - genetics; posttranslational modification; quorum sensing; Spectrometry, Mass, Electrospray Ionization; Spectrophotometry, Ultraviolet; STRUCTURE ACTIVITY RELATIONSHIPS; TRYPTOPHAN; Tryptophan - analogs & derivatives; Tryptophan - analysis; Tryptophan - biosynthesis; Tryptophan - chemistry
• ISSN: 0916-8451; 1347-6947
• DOI: 10.1271/bbb.68.2374

Bacteria produce and respond to signal molecules depending on their cell density. This process is called "quorum sensing". The ComX pheromone, controlled by quorum sensing, activates natural genetic competence in Bacillus subtilis. ComX is an oligopeptide with a posttranslational modification. It has been suggested that ComX pheromone is modified with an isoprenoid at its tryptophan residue, but the complete chemical structure is unknown. We first determined the molecular formula of ComXRO-E-2, a competence factor for B. subtilis strain RO-E-2. Then we synthesized putative pheromones with 1-, 2-, 4-, 5-, 6-, or 7-geranyl substituted tryptophan residues. The regio- and stereoselective synthesis of the geranyl tryptophans was successful, and we prepared the six peptides with modified tryptophan residues. These peptides had the same molecular formula and showed similar hydrophobicity to the natural ComXRO-E-2 in LC-MS analysis. But, none of them showed the same retention time as the natural pheromone and none exhibited its biological activity. These results suggest that the isoprenoid modification pattern of the tryptophan residue is more complex than postulated.