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Human and mouse ZFP57 proteins are functionally interchangeable in maintaining genomic imprinting at multiple imprinted regions in mouse ES cells
Genomic imprinting is a common epigenetic phenomenon in mammals. Dysregulation of genomic imprinting has been implicated in a variety of human diseases. ZFP57 is a master regulator in genomic imprinting. Loss of ZFP57 causes loss of DNA methylation imprint at multiple imprinted regions in mouse embr...
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Published in: | Epigenetics 2013-12, Vol.8 (12), p.1268-1279 |
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description | Genomic imprinting is a common epigenetic phenomenon in mammals. Dysregulation of genomic imprinting has been implicated in a variety of human diseases. ZFP57 is a master regulator in genomic imprinting. Loss of ZFP57 causes loss of DNA methylation imprint at multiple imprinted regions in mouse embryos, as well as in embryonic stem (ES) cells. Similarly, mutations in human ZFP57 result in hypomethylation at many imprinted regions and are associated with transient neonatal diabetes and other human diseases. Mouse and human Zfp57 genes are located in the same syntenic block. However, mouse and human ZFP57 proteins only display about 50% sequence identity with different number of zinc fingers. It is not clear if they share similar mechanisms in maintaining genomic imprinting. Here we report that mouse and human ZFP57 proteins are functionally interchangeable. Expression of exogenous wild-type human ZFP57 could maintain DNA methylation imprint at three imprinted regions in mouse ES cells in the absence of endogenous mouse ZFP57. However, mutant human ZFP57 proteins containing the mutations found in human patients could not substitute for endogenous mouse ZFP57 in maintaining genomic imprinting in ES cells. Like mouse ZFP57, human ZFP57 and its mutant proteins could bind to mouse KAP1, the universal cofactor for KRAB zinc finger proteins, in mouse ES cells. Thus, we conclude that mouse and human ZFP57 are orthologs despite relatively low sequence identity and mouse ES cell system that we had established before is a valuable system for functional analyses of wild-type and mutant human ZFP57 proteins. |
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Dysregulation of genomic imprinting has been implicated in a variety of human diseases. ZFP57 is a master regulator in genomic imprinting. Loss of ZFP57 causes loss of DNA methylation imprint at multiple imprinted regions in mouse embryos, as well as in embryonic stem (ES) cells. Similarly, mutations in human ZFP57 result in hypomethylation at many imprinted regions and are associated with transient neonatal diabetes and other human diseases. Mouse and human Zfp57 genes are located in the same syntenic block. However, mouse and human ZFP57 proteins only display about 50% sequence identity with different number of zinc fingers. It is not clear if they share similar mechanisms in maintaining genomic imprinting. Here we report that mouse and human ZFP57 proteins are functionally interchangeable. Expression of exogenous wild-type human ZFP57 could maintain DNA methylation imprint at three imprinted regions in mouse ES cells in the absence of endogenous mouse ZFP57. However, mutant human ZFP57 proteins containing the mutations found in human patients could not substitute for endogenous mouse ZFP57 in maintaining genomic imprinting in ES cells. Like mouse ZFP57, human ZFP57 and its mutant proteins could bind to mouse KAP1, the universal cofactor for KRAB zinc finger proteins, in mouse ES cells. Thus, we conclude that mouse and human ZFP57 are orthologs despite relatively low sequence identity and mouse ES cell system that we had established before is a valuable system for functional analyses of wild-type and mutant human ZFP57 proteins.</description><identifier>ISSN: 1559-2294</identifier><identifier>EISSN: 1559-2308</identifier><identifier>DOI: 10.4161/epi.26544</identifier><identifier>PMID: 24135613</identifier><language>eng</language><publisher>United States: Taylor & Francis</publisher><subject>Animals ; bisulphite analysis ; Cell Line ; Dlk1-Dio3 imprinted region ; DNA Methylation ; DNA methylation imprint ; DNA-Binding Proteins - genetics ; DNA-Binding Proteins - metabolism ; ES cells ; Genomic Imprinting ; Humans ; loss-of-function mutation ; Mice ; Mutation ; Nuclear Proteins - metabolism ; ortholog ; Repressor Proteins - genetics ; Repressor Proteins - metabolism ; Research Paper ; Snrpn ; Transcription Factors - genetics ; Transcription Factors - metabolism ; Tripartite Motif-Containing Protein 28 ; Zac1 ; ZFP57</subject><ispartof>Epigenetics, 2013-12, Vol.8 (12), p.1268-1279</ispartof><rights>Copyright © 2013 Landes Bioscience 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c486t-cdc171b8c8266726f375485fbd794e282996df9f97e06f9c62b11475f1d385c83</citedby><cites>FETCH-LOGICAL-c486t-cdc171b8c8266726f375485fbd794e282996df9f97e06f9c62b11475f1d385c83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933488/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933488/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24135613$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Takikawa, Sachiko</creatorcontrib><creatorcontrib>Wang, Xin</creatorcontrib><creatorcontrib>Ray, Chelsea</creatorcontrib><creatorcontrib>Vakulenko, Max</creatorcontrib><creatorcontrib>Bell, Fong T</creatorcontrib><creatorcontrib>Li, Xiajun</creatorcontrib><title>Human and mouse ZFP57 proteins are functionally interchangeable in maintaining genomic imprinting at multiple imprinted regions in mouse ES cells</title><title>Epigenetics</title><addtitle>Epigenetics</addtitle><description>Genomic imprinting is a common epigenetic phenomenon in mammals. Dysregulation of genomic imprinting has been implicated in a variety of human diseases. ZFP57 is a master regulator in genomic imprinting. Loss of ZFP57 causes loss of DNA methylation imprint at multiple imprinted regions in mouse embryos, as well as in embryonic stem (ES) cells. Similarly, mutations in human ZFP57 result in hypomethylation at many imprinted regions and are associated with transient neonatal diabetes and other human diseases. Mouse and human Zfp57 genes are located in the same syntenic block. However, mouse and human ZFP57 proteins only display about 50% sequence identity with different number of zinc fingers. It is not clear if they share similar mechanisms in maintaining genomic imprinting. Here we report that mouse and human ZFP57 proteins are functionally interchangeable. Expression of exogenous wild-type human ZFP57 could maintain DNA methylation imprint at three imprinted regions in mouse ES cells in the absence of endogenous mouse ZFP57. However, mutant human ZFP57 proteins containing the mutations found in human patients could not substitute for endogenous mouse ZFP57 in maintaining genomic imprinting in ES cells. Like mouse ZFP57, human ZFP57 and its mutant proteins could bind to mouse KAP1, the universal cofactor for KRAB zinc finger proteins, in mouse ES cells. Thus, we conclude that mouse and human ZFP57 are orthologs despite relatively low sequence identity and mouse ES cell system that we had established before is a valuable system for functional analyses of wild-type and mutant human ZFP57 proteins.</description><subject>Animals</subject><subject>bisulphite analysis</subject><subject>Cell Line</subject><subject>Dlk1-Dio3 imprinted region</subject><subject>DNA Methylation</subject><subject>DNA methylation imprint</subject><subject>DNA-Binding Proteins - genetics</subject><subject>DNA-Binding Proteins - metabolism</subject><subject>ES cells</subject><subject>Genomic Imprinting</subject><subject>Humans</subject><subject>loss-of-function mutation</subject><subject>Mice</subject><subject>Mutation</subject><subject>Nuclear Proteins - metabolism</subject><subject>ortholog</subject><subject>Repressor Proteins - genetics</subject><subject>Repressor Proteins - metabolism</subject><subject>Research Paper</subject><subject>Snrpn</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - metabolism</subject><subject>Tripartite Motif-Containing Protein 28</subject><subject>Zac1</subject><subject>ZFP57</subject><issn>1559-2294</issn><issn>1559-2308</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><recordid>eNplkcuKFDEUhgtRnIsufAHJUhc9ViqXSjaCDHMRBhTUjZuQSp30RHIpk6qRfgzf2FT3zKC4CEn-fPnPOfxN8wq3ZxRz_A4md9ZxRumT5hgzJjcdacXTh3Mn6VFzUsqPtqWES_m8OeooJoxjctz8vl6CjkjHEYW0FEDfLz-zHk05zeBiQToDsks0s0tRe79DLs6Qza2OW9CDh3pHQVexLhe3aAsxBWeQC1Ou6irpGYXFz25a6YMMI8qwrZZl_39f-OILMuB9edE8s9oXeHm_nzbfLi--nl9vbj5dfTz_cLMxVPB5Y0aDezwIIzrO-45b0jMqmB3GXlLoRCclH620soeWW2l4N2BMe2bxSAQzgpw27w--0zIEGA3EOWuvan9B551K2ql_X6K7Vdt0p4gkhIrV4M29QU4_FyizCq6sI-gIdSKFqWy5FJjxir49oCanUjLYxzK4VWuEqkao9hFW9vXffT2SD5lVgB4AF23KQf9K2Y9q1jufss06GlcU-d_3D2acrOM</recordid><startdate>20131201</startdate><enddate>20131201</enddate><creator>Takikawa, Sachiko</creator><creator>Wang, Xin</creator><creator>Ray, Chelsea</creator><creator>Vakulenko, Max</creator><creator>Bell, Fong T</creator><creator>Li, Xiajun</creator><general>Taylor & Francis</general><general>Landes Bioscience</general><scope>0YH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20131201</creationdate><title>Human and mouse ZFP57 proteins are functionally interchangeable in maintaining genomic imprinting at multiple imprinted regions in mouse ES cells</title><author>Takikawa, Sachiko ; Wang, Xin ; Ray, Chelsea ; Vakulenko, Max ; Bell, Fong T ; Li, Xiajun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c486t-cdc171b8c8266726f375485fbd794e282996df9f97e06f9c62b11475f1d385c83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Animals</topic><topic>bisulphite analysis</topic><topic>Cell Line</topic><topic>Dlk1-Dio3 imprinted region</topic><topic>DNA Methylation</topic><topic>DNA methylation imprint</topic><topic>DNA-Binding Proteins - genetics</topic><topic>DNA-Binding Proteins - metabolism</topic><topic>ES cells</topic><topic>Genomic Imprinting</topic><topic>Humans</topic><topic>loss-of-function mutation</topic><topic>Mice</topic><topic>Mutation</topic><topic>Nuclear Proteins - metabolism</topic><topic>ortholog</topic><topic>Repressor Proteins - genetics</topic><topic>Repressor Proteins - metabolism</topic><topic>Research Paper</topic><topic>Snrpn</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - metabolism</topic><topic>Tripartite Motif-Containing Protein 28</topic><topic>Zac1</topic><topic>ZFP57</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Takikawa, Sachiko</creatorcontrib><creatorcontrib>Wang, Xin</creatorcontrib><creatorcontrib>Ray, Chelsea</creatorcontrib><creatorcontrib>Vakulenko, Max</creatorcontrib><creatorcontrib>Bell, Fong T</creatorcontrib><creatorcontrib>Li, Xiajun</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Epigenetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Takikawa, Sachiko</au><au>Wang, Xin</au><au>Ray, Chelsea</au><au>Vakulenko, Max</au><au>Bell, Fong T</au><au>Li, Xiajun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Human and mouse ZFP57 proteins are functionally interchangeable in maintaining genomic imprinting at multiple imprinted regions in mouse ES cells</atitle><jtitle>Epigenetics</jtitle><addtitle>Epigenetics</addtitle><date>2013-12-01</date><risdate>2013</risdate><volume>8</volume><issue>12</issue><spage>1268</spage><epage>1279</epage><pages>1268-1279</pages><issn>1559-2294</issn><eissn>1559-2308</eissn><abstract>Genomic imprinting is a common epigenetic phenomenon in mammals. Dysregulation of genomic imprinting has been implicated in a variety of human diseases. ZFP57 is a master regulator in genomic imprinting. Loss of ZFP57 causes loss of DNA methylation imprint at multiple imprinted regions in mouse embryos, as well as in embryonic stem (ES) cells. Similarly, mutations in human ZFP57 result in hypomethylation at many imprinted regions and are associated with transient neonatal diabetes and other human diseases. Mouse and human Zfp57 genes are located in the same syntenic block. However, mouse and human ZFP57 proteins only display about 50% sequence identity with different number of zinc fingers. It is not clear if they share similar mechanisms in maintaining genomic imprinting. Here we report that mouse and human ZFP57 proteins are functionally interchangeable. Expression of exogenous wild-type human ZFP57 could maintain DNA methylation imprint at three imprinted regions in mouse ES cells in the absence of endogenous mouse ZFP57. However, mutant human ZFP57 proteins containing the mutations found in human patients could not substitute for endogenous mouse ZFP57 in maintaining genomic imprinting in ES cells. Like mouse ZFP57, human ZFP57 and its mutant proteins could bind to mouse KAP1, the universal cofactor for KRAB zinc finger proteins, in mouse ES cells. Thus, we conclude that mouse and human ZFP57 are orthologs despite relatively low sequence identity and mouse ES cell system that we had established before is a valuable system for functional analyses of wild-type and mutant human ZFP57 proteins.</abstract><cop>United States</cop><pub>Taylor & Francis</pub><pmid>24135613</pmid><doi>10.4161/epi.26544</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Animals bisulphite analysis Cell Line Dlk1-Dio3 imprinted region DNA Methylation DNA methylation imprint DNA-Binding Proteins - genetics DNA-Binding Proteins - metabolism ES cells Genomic Imprinting Humans loss-of-function mutation Mice Mutation Nuclear Proteins - metabolism ortholog Repressor Proteins - genetics Repressor Proteins - metabolism Research Paper Snrpn Transcription Factors - genetics Transcription Factors - metabolism Tripartite Motif-Containing Protein 28 Zac1 ZFP57 |
title | Human and mouse ZFP57 proteins are functionally interchangeable in maintaining genomic imprinting at multiple imprinted regions in mouse ES cells |
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