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The complete mitochondrial genome of the critically endangered Vietnamese three-striped box turtle (Testudines: Geoemydidae)
The complete mitochondrial genome of the Vietnamese three-striped box turtle (Cuora cyclornata) was first determined in this study. It was a circular molecule of 16,594 bp in length, consisting of 37 genes typically found in other vertebrates. The AT content of the overall base composition of the wh...
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| Published in: | Mitochondrial DNA 2015-11, Vol.26 (6), p.925-926 |
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| Main Authors: | , , , , , |
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| Language: | English |
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| container_end_page | 926 |
| container_issue | 6 |
| container_start_page | 925 |
| container_title | Mitochondrial DNA |
| container_volume | 26 |
| creator | Li, Wei Zhao, Jian Shi, Yan Xiao, Feng-Fang Zhang, Xin-Cheng Zhu, Xin-Ping |
| description | The complete mitochondrial genome of the Vietnamese three-striped box turtle (Cuora cyclornata) was first determined in this study. It was a circular molecule of 16,594 bp in length, consisting of 37 genes typically found in other vertebrates. The AT content of the overall base composition of the whole mitogenome was 60.39%, while the control region was 70.23%. Two ETAS and 4 CSBs were identified, while a remarkable feature was found in the control region: a large number of (TTATTATA)
10
direct tandem repeats followed by (TTATA)
n
(n = 10, 8 and 1), which were spaced into three domains by (TA)
n
(n = 1, 1 and 2). The sequence information could play an important role in the study of phylogenetic relationships in turtles and preservation of genetic resources for helping conservation of the endangered species. |
| doi_str_mv | 10.3109/19401736.2013.863293 |
| format | article |
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10
direct tandem repeats followed by (TTATA)
n
(n = 10, 8 and 1), which were spaced into three domains by (TA)
n
(n = 1, 1 and 2). The sequence information could play an important role in the study of phylogenetic relationships in turtles and preservation of genetic resources for helping conservation of the endangered species.</description><identifier>ISSN: 1940-1736</identifier><identifier>EISSN: 1940-1744</identifier><identifier>DOI: 10.3109/19401736.2013.863293</identifier><identifier>PMID: 24409888</identifier><language>eng</language><publisher>England: Informa Healthcare</publisher><subject>Animals ; Base Composition ; Cuora cyclornata ; Cuora trifasciata ; Endangered Species ; Genome, Mitochondrial ; mitochondrial genome ; Molecular Sequence Data ; Sequence Analysis, DNA - methods ; Testudines ; Turtles - classification ; Turtles - genetics ; Vietnamese three-striped box turtle</subject><ispartof>Mitochondrial DNA, 2015-11, Vol.26 (6), p.925-926</ispartof><rights>2014 Informa UK Ltd. 2014</rights><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c312t-571d569e3875856faba51abbcda40a98cbcee792e4e2611d46960d76e1bb7bb63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24409888$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Wei</creatorcontrib><creatorcontrib>Zhao, Jian</creatorcontrib><creatorcontrib>Shi, Yan</creatorcontrib><creatorcontrib>Xiao, Feng-Fang</creatorcontrib><creatorcontrib>Zhang, Xin-Cheng</creatorcontrib><creatorcontrib>Zhu, Xin-Ping</creatorcontrib><title>The complete mitochondrial genome of the critically endangered Vietnamese three-striped box turtle (Testudines: Geoemydidae)</title><title>Mitochondrial DNA</title><addtitle>Mitochondrial DNA</addtitle><description>The complete mitochondrial genome of the Vietnamese three-striped box turtle (Cuora cyclornata) was first determined in this study. It was a circular molecule of 16,594 bp in length, consisting of 37 genes typically found in other vertebrates. The AT content of the overall base composition of the whole mitogenome was 60.39%, while the control region was 70.23%. Two ETAS and 4 CSBs were identified, while a remarkable feature was found in the control region: a large number of (TTATTATA)
10
direct tandem repeats followed by (TTATA)
n
(n = 10, 8 and 1), which were spaced into three domains by (TA)
n
(n = 1, 1 and 2). The sequence information could play an important role in the study of phylogenetic relationships in turtles and preservation of genetic resources for helping conservation of the endangered species.</description><subject>Animals</subject><subject>Base Composition</subject><subject>Cuora cyclornata</subject><subject>Cuora trifasciata</subject><subject>Endangered Species</subject><subject>Genome, Mitochondrial</subject><subject>mitochondrial genome</subject><subject>Molecular Sequence Data</subject><subject>Sequence Analysis, DNA - methods</subject><subject>Testudines</subject><subject>Turtles - classification</subject><subject>Turtles - genetics</subject><subject>Vietnamese three-striped box turtle</subject><issn>1940-1736</issn><issn>1940-1744</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNp9kEtv1DAQgC0EoqXwDxDysRyy-BUn5oJQBQWpEpeFq-XHpDVy7MV2BCvx40m0bY-cZjTzzUMfQq8p2XFK1DuqBKEDlztGKN-NkjPFn6DzrdzRQYinjzmXZ-hFrT8JkYwR9RydMSGIGsfxHP3d3wF2eT5EaIDn0LK7y8mXYCK-hZRnwHnCbYNKaMGZGI8YkjfpFgp4_CNAS2aGCitUALraSjisDZv_4LaUFgFf7qG2xYcE9T2-hgzz0Qdv4O1L9GwyscKr-3iBvn_-tL_60t18u_569fGmc5yy1vUD9b1UwMehH3s5GWt6aqx13ghi1OisAxgUAwFMUuqFVJL4QQK1drBW8gt0edp7KPnXsj6j51AdxGgS5KVqOlCpBKOUrqg4oa7kWgtM-lDCbMpRU6I37_rBu96865P3dezN_YXFzuAfhx5Er8CHExDSlMtsfucSvW7mGHOZikku1G39f078A_4nlDM</recordid><startdate>20151102</startdate><enddate>20151102</enddate><creator>Li, Wei</creator><creator>Zhao, Jian</creator><creator>Shi, Yan</creator><creator>Xiao, Feng-Fang</creator><creator>Zhang, Xin-Cheng</creator><creator>Zhu, Xin-Ping</creator><general>Informa Healthcare</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20151102</creationdate><title>The complete mitochondrial genome of the critically endangered Vietnamese three-striped box turtle (Testudines: Geoemydidae)</title><author>Li, Wei ; Zhao, Jian ; Shi, Yan ; Xiao, Feng-Fang ; Zhang, Xin-Cheng ; Zhu, Xin-Ping</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c312t-571d569e3875856faba51abbcda40a98cbcee792e4e2611d46960d76e1bb7bb63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Animals</topic><topic>Base Composition</topic><topic>Cuora cyclornata</topic><topic>Cuora trifasciata</topic><topic>Endangered Species</topic><topic>Genome, Mitochondrial</topic><topic>mitochondrial genome</topic><topic>Molecular Sequence Data</topic><topic>Sequence Analysis, DNA - methods</topic><topic>Testudines</topic><topic>Turtles - classification</topic><topic>Turtles - genetics</topic><topic>Vietnamese three-striped box turtle</topic><toplevel>online_resources</toplevel><creatorcontrib>Li, Wei</creatorcontrib><creatorcontrib>Zhao, Jian</creatorcontrib><creatorcontrib>Shi, Yan</creatorcontrib><creatorcontrib>Xiao, Feng-Fang</creatorcontrib><creatorcontrib>Zhang, Xin-Cheng</creatorcontrib><creatorcontrib>Zhu, Xin-Ping</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Mitochondrial DNA</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Wei</au><au>Zhao, Jian</au><au>Shi, Yan</au><au>Xiao, Feng-Fang</au><au>Zhang, Xin-Cheng</au><au>Zhu, Xin-Ping</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete mitochondrial genome of the critically endangered Vietnamese three-striped box turtle (Testudines: Geoemydidae)</atitle><jtitle>Mitochondrial DNA</jtitle><addtitle>Mitochondrial DNA</addtitle><date>2015-11-02</date><risdate>2015</risdate><volume>26</volume><issue>6</issue><spage>925</spage><epage>926</epage><pages>925-926</pages><issn>1940-1736</issn><eissn>1940-1744</eissn><abstract>The complete mitochondrial genome of the Vietnamese three-striped box turtle (Cuora cyclornata) was first determined in this study. It was a circular molecule of 16,594 bp in length, consisting of 37 genes typically found in other vertebrates. The AT content of the overall base composition of the whole mitogenome was 60.39%, while the control region was 70.23%. Two ETAS and 4 CSBs were identified, while a remarkable feature was found in the control region: a large number of (TTATTATA)
10
direct tandem repeats followed by (TTATA)
n
(n = 10, 8 and 1), which were spaced into three domains by (TA)
n
(n = 1, 1 and 2). The sequence information could play an important role in the study of phylogenetic relationships in turtles and preservation of genetic resources for helping conservation of the endangered species.</abstract><cop>England</cop><pub>Informa Healthcare</pub><pmid>24409888</pmid><doi>10.3109/19401736.2013.863293</doi><tpages>2</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1940-1736 |
| ispartof | Mitochondrial DNA, 2015-11, Vol.26 (6), p.925-926 |
| issn | 1940-1736 1940-1744 |
| language | eng |
| recordid | cdi_pubmed_primary_24409888 |
| source | Taylor and Francis Science and Technology Collection |
| subjects | Animals Base Composition Cuora cyclornata Cuora trifasciata Endangered Species Genome, Mitochondrial mitochondrial genome Molecular Sequence Data Sequence Analysis, DNA - methods Testudines Turtles - classification Turtles - genetics Vietnamese three-striped box turtle |
| title | The complete mitochondrial genome of the critically endangered Vietnamese three-striped box turtle (Testudines: Geoemydidae) |
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