Complete mitochondrial genome of Xingguo red carp (Cyprinus carpio var. singuonensis) and purse red carp (Cyprinus carpio var. wuyuanensis)

The complete mitochondrial genomes of Xingguo red carp (Cyprinus carpio var. singuonensis) and purse red carp (Cyprinus carpio var. wuyuanensis) were sequenced. Comparison of these two mitochondrial genomes revealed that the mtDNAs of these two common carp varieties were remarkably similar in genome...

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Bibliographic Details
Published in:Mitochondrial DNA. Part A. DNA mapping, sequencing, and analysis sequencing, and analysis, 2016-01, Vol.27 (1), p.244-245
Main Authors: Hu, Guang-Fu, Liu, Xiang-Jiang, Li, Zhong, Liang, Hong-Wei, Hu, Shao-Na, Zou, Gui-Wei
Format: Article
Language:English
Subjects:
Animals
Carps - genetics
Genes, rRNA
Genetic Variation
Genome, Mitochondrial - genetics
Mitochondrial genome
Molecular Sequence Annotation
Molecular Sequence Data
Open Reading Frames - genetics
Phylogeny
purse red carp
RNA, Transfer - genetics
Sequence Analysis, DNA
Xingguo red carp
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Summary:The complete mitochondrial genomes of Xingguo red carp (Cyprinus carpio var. singuonensis) and purse red carp (Cyprinus carpio var. wuyuanensis) were sequenced. Comparison of these two mitochondrial genomes revealed that the mtDNAs of these two common carp varieties were remarkably similar in genome length, gene order and content, and AT content. However, size variation between these two mitochondrial genomes presented here showed 39 site differences in overall length. About 2 site differences were located in rRNAs, 3 in tRNAs, 3 in the control region, 31 in protein-coding genes. Thirty-one variable bases in the protein-coding regions between the two varieties mitochondrial sequences led to three variable amino acids, which were mainly located in the protein ND5 and ND4.
ISSN:2470-1394
2470-1408
DOI:10.3109/19401736.2014.883607