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Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications
Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tiss...
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Published in: | Journal of biomedical optics 2022-03, Vol.27 (3), p.030901-030901 |
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container_title | Journal of biomedical optics |
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creator | Silva, Vania B Andrade De Jesus, Danilo Klein, Stefan van Walsum, Theo Cardoso, João Brea, Luisa Sánchez Vaz, Pedro G |
description | Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tissues from which it is originated.
Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications.
Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review.
Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications.
Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context. |
doi_str_mv | 10.1117/1.JBO.27.3.030901 |
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Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications.
Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review.
Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications.
Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context.</description><identifier>ISSN: 1083-3668</identifier><identifier>EISSN: 1560-2281</identifier><identifier>DOI: 10.1117/1.JBO.27.3.030901</identifier><identifier>PMID: 35289154</identifier><language>eng</language><publisher>United States: Society of Photo-Optical Instrumentation Engineers</publisher><subject>Biomedical materials ; Coherent light ; Context ; Image segmentation ; Information retrieval ; Light ; Medical imaging ; Optical Coherence Tomography ; Optical communication ; Phantoms, Imaging ; Reproducibility of Results ; Review Papers ; Reviews ; Signal processing ; Speckle patterns ; Tomography ; Tomography, Optical Coherence - methods</subject><ispartof>Journal of biomedical optics, 2022-03, Vol.27 (3), p.030901-030901</ispartof><rights>The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.</rights><rights>2022. This work is licensed under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 The Authors 2022 The Authors</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c466t-805c7932c640e61c959e5cd1eb04446bd59781ddbfad824d628227b54eab1be83</citedby><orcidid>0000-0003-4449-6784 ; 0000-0001-5799-4163 ; 0000-0002-4061-4846 ; 0000-0003-3490-7789</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2862332718/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2862332718?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,24024,25734,27905,27906,36993,36994,44571,53772,53774,55360,55361,74875</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35289154$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Silva, Vania B</creatorcontrib><creatorcontrib>Andrade De Jesus, Danilo</creatorcontrib><creatorcontrib>Klein, Stefan</creatorcontrib><creatorcontrib>van Walsum, Theo</creatorcontrib><creatorcontrib>Cardoso, João</creatorcontrib><creatorcontrib>Brea, Luisa Sánchez</creatorcontrib><creatorcontrib>Vaz, Pedro G</creatorcontrib><title>Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications</title><title>Journal of biomedical optics</title><addtitle>J. Biomed. Opt</addtitle><description>Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tissues from which it is originated.
Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications.
Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review.
Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications.
Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context.</description><subject>Biomedical materials</subject><subject>Coherent light</subject><subject>Context</subject><subject>Image segmentation</subject><subject>Information retrieval</subject><subject>Light</subject><subject>Medical imaging</subject><subject>Optical Coherence Tomography</subject><subject>Optical communication</subject><subject>Phantoms, Imaging</subject><subject>Reproducibility of Results</subject><subject>Review Papers</subject><subject>Reviews</subject><subject>Signal processing</subject><subject>Speckle patterns</subject><subject>Tomography</subject><subject>Tomography, Optical Coherence - methods</subject><issn>1083-3668</issn><issn>1560-2281</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNp1kUtv1TAQhS0EoqXwA9ggS2zYJPgROzYLJKh4qlIXwNpynLm5bh072LlF99_j9pbykFh5ZH9z5ngOQk8paSml_Uvafn573rK-5S3hRBN6Dx1TIUnDmKL3a00Ub7iU6gg9KuWCEKKklg_RERdMaSq6Y3T5xU_RhsbZnPc-Trgs4C4DYB9xWlbvbMAubSFDdIDXNKcp22W7f4UtnmHdpjGFNN1gGa48_MAp4sGnGcabS7ssoRarT7E8Rg82NhR4cnueoG_v3309_dicnX_4dPrmrHGdlGujiHC95szJjoCkTgsNwo0UBtJ1nRxGoXtFx3HY2FGxbpRMMdYPogM70AEUP0GvD7rLbqg-HMQ122CW7Geb9yZZb_5-iX5rpnRl6k40YaIKvLgVyOn7DspqZl8chGAjpF0xTHLNmFRaV_T5P-hF2uW60UopyThnPb12RA-Uy6mUDJs7M5SY6ygNNTVKw3rDzSHK2vPsz1_cdfzKrgLtASiLh99j_6_4E-kvqoY</recordid><startdate>20220301</startdate><enddate>20220301</enddate><creator>Silva, Vania B</creator><creator>Andrade De Jesus, Danilo</creator><creator>Klein, Stefan</creator><creator>van Walsum, Theo</creator><creator>Cardoso, João</creator><creator>Brea, Luisa Sánchez</creator><creator>Vaz, Pedro G</creator><general>Society of Photo-Optical Instrumentation Engineers</general><general>S P I E - International Society for</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F28</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>H8D</scope><scope>H8G</scope><scope>HCIFZ</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>LK8</scope><scope>L~C</scope><scope>L~D</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-4449-6784</orcidid><orcidid>https://orcid.org/0000-0001-5799-4163</orcidid><orcidid>https://orcid.org/0000-0002-4061-4846</orcidid><orcidid>https://orcid.org/0000-0003-3490-7789</orcidid></search><sort><creationdate>20220301</creationdate><title>Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications</title><author>Silva, Vania B ; 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Biomed. Opt</addtitle><date>2022-03-01</date><risdate>2022</risdate><volume>27</volume><issue>3</issue><spage>030901</spage><epage>030901</epage><pages>030901-030901</pages><issn>1083-3668</issn><eissn>1560-2281</eissn><abstract>Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tissues from which it is originated.
Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications.
Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review.
Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications.
Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context.</abstract><cop>United States</cop><pub>Society of Photo-Optical Instrumentation Engineers</pub><pmid>35289154</pmid><doi>10.1117/1.JBO.27.3.030901</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0003-4449-6784</orcidid><orcidid>https://orcid.org/0000-0001-5799-4163</orcidid><orcidid>https://orcid.org/0000-0002-4061-4846</orcidid><orcidid>https://orcid.org/0000-0003-3490-7789</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Biomedical materials Coherent light Context Image segmentation Information retrieval Light Medical imaging Optical Coherence Tomography Optical communication Phantoms, Imaging Reproducibility of Results Review Papers Reviews Signal processing Speckle patterns Tomography Tomography, Optical Coherence - methods |
title | Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications |
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