Loading…

Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications

Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tiss...

Full description

Saved in:
Bibliographic Details
Published in:Journal of biomedical optics 2022-03, Vol.27 (3), p.030901-030901
Main Authors: Silva, Vania B, Andrade De Jesus, Danilo, Klein, Stefan, van Walsum, Theo, Cardoso, João, Brea, Luisa Sánchez, Vaz, Pedro G
Format: Article
Language:English
Subjects:
Citations: Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c466t-805c7932c640e61c959e5cd1eb04446bd59781ddbfad824d628227b54eab1be83
cites
container_end_page 030901
container_issue 3
container_start_page 030901
container_title Journal of biomedical optics
container_volume 27
creator Silva, Vania B
Andrade De Jesus, Danilo
Klein, Stefan
van Walsum, Theo
Cardoso, João
Brea, Luisa Sánchez
Vaz, Pedro G
description Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tissues from which it is originated. Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications. Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review. Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications. Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context.
doi_str_mv 10.1117/1.JBO.27.3.030901
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmed_primary_35289154</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2639226899</sourcerecordid><originalsourceid>FETCH-LOGICAL-c466t-805c7932c640e61c959e5cd1eb04446bd59781ddbfad824d628227b54eab1be83</originalsourceid><addsrcrecordid>eNp1kUtv1TAQhS0EoqXwA9ggS2zYJPgROzYLJKh4qlIXwNpynLm5bh072LlF99_j9pbykFh5ZH9z5ngOQk8paSml_Uvafn573rK-5S3hRBN6Dx1TIUnDmKL3a00Ub7iU6gg9KuWCEKKklg_RERdMaSq6Y3T5xU_RhsbZnPc-Trgs4C4DYB9xWlbvbMAubSFDdIDXNKcp22W7f4UtnmHdpjGFNN1gGa48_MAp4sGnGcabS7ssoRarT7E8Rg82NhR4cnueoG_v3309_dicnX_4dPrmrHGdlGujiHC95szJjoCkTgsNwo0UBtJ1nRxGoXtFx3HY2FGxbpRMMdYPogM70AEUP0GvD7rLbqg-HMQ122CW7Geb9yZZb_5-iX5rpnRl6k40YaIKvLgVyOn7DspqZl8chGAjpF0xTHLNmFRaV_T5P-hF2uW60UopyThnPb12RA-Uy6mUDJs7M5SY6ygNNTVKw3rDzSHK2vPsz1_cdfzKrgLtASiLh99j_6_4E-kvqoY</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2862332718</pqid></control><display><type>article</type><title>Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications</title><source>Publicly Available Content Database</source><source>SPIE Digital Library (Journals)</source><source>PubMed Central</source><creator>Silva, Vania B ; Andrade De Jesus, Danilo ; Klein, Stefan ; van Walsum, Theo ; Cardoso, João ; Brea, Luisa Sánchez ; Vaz, Pedro G</creator><creatorcontrib>Silva, Vania B ; Andrade De Jesus, Danilo ; Klein, Stefan ; van Walsum, Theo ; Cardoso, João ; Brea, Luisa Sánchez ; Vaz, Pedro G</creatorcontrib><description>Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tissues from which it is originated. Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications. Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review. Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications. Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context.</description><identifier>ISSN: 1083-3668</identifier><identifier>EISSN: 1560-2281</identifier><identifier>DOI: 10.1117/1.JBO.27.3.030901</identifier><identifier>PMID: 35289154</identifier><language>eng</language><publisher>United States: Society of Photo-Optical Instrumentation Engineers</publisher><subject>Biomedical materials ; Coherent light ; Context ; Image segmentation ; Information retrieval ; Light ; Medical imaging ; Optical Coherence Tomography ; Optical communication ; Phantoms, Imaging ; Reproducibility of Results ; Review Papers ; Reviews ; Signal processing ; Speckle patterns ; Tomography ; Tomography, Optical Coherence - methods</subject><ispartof>Journal of biomedical optics, 2022-03, Vol.27 (3), p.030901-030901</ispartof><rights>The Authors. Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.</rights><rights>2022. This work is licensed under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 The Authors 2022 The Authors</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c466t-805c7932c640e61c959e5cd1eb04446bd59781ddbfad824d628227b54eab1be83</citedby><orcidid>0000-0003-4449-6784 ; 0000-0001-5799-4163 ; 0000-0002-4061-4846 ; 0000-0003-3490-7789</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2862332718/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2862332718?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,24024,25734,27905,27906,36993,36994,44571,53772,53774,55360,55361,74875</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35289154$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Silva, Vania B</creatorcontrib><creatorcontrib>Andrade De Jesus, Danilo</creatorcontrib><creatorcontrib>Klein, Stefan</creatorcontrib><creatorcontrib>van Walsum, Theo</creatorcontrib><creatorcontrib>Cardoso, João</creatorcontrib><creatorcontrib>Brea, Luisa Sánchez</creatorcontrib><creatorcontrib>Vaz, Pedro G</creatorcontrib><title>Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications</title><title>Journal of biomedical optics</title><addtitle>J. Biomed. Opt</addtitle><description>Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tissues from which it is originated. Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications. Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review. Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications. Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context.</description><subject>Biomedical materials</subject><subject>Coherent light</subject><subject>Context</subject><subject>Image segmentation</subject><subject>Information retrieval</subject><subject>Light</subject><subject>Medical imaging</subject><subject>Optical Coherence Tomography</subject><subject>Optical communication</subject><subject>Phantoms, Imaging</subject><subject>Reproducibility of Results</subject><subject>Review Papers</subject><subject>Reviews</subject><subject>Signal processing</subject><subject>Speckle patterns</subject><subject>Tomography</subject><subject>Tomography, Optical Coherence - methods</subject><issn>1083-3668</issn><issn>1560-2281</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNp1kUtv1TAQhS0EoqXwA9ggS2zYJPgROzYLJKh4qlIXwNpynLm5bh072LlF99_j9pbykFh5ZH9z5ngOQk8paSml_Uvafn573rK-5S3hRBN6Dx1TIUnDmKL3a00Ub7iU6gg9KuWCEKKklg_RERdMaSq6Y3T5xU_RhsbZnPc-Trgs4C4DYB9xWlbvbMAubSFDdIDXNKcp22W7f4UtnmHdpjGFNN1gGa48_MAp4sGnGcabS7ssoRarT7E8Rg82NhR4cnueoG_v3309_dicnX_4dPrmrHGdlGujiHC95szJjoCkTgsNwo0UBtJ1nRxGoXtFx3HY2FGxbpRMMdYPogM70AEUP0GvD7rLbqg-HMQ122CW7Geb9yZZb_5-iX5rpnRl6k40YaIKvLgVyOn7DspqZl8chGAjpF0xTHLNmFRaV_T5P-hF2uW60UopyThnPb12RA-Uy6mUDJs7M5SY6ygNNTVKw3rDzSHK2vPsz1_cdfzKrgLtASiLh99j_6_4E-kvqoY</recordid><startdate>20220301</startdate><enddate>20220301</enddate><creator>Silva, Vania B</creator><creator>Andrade De Jesus, Danilo</creator><creator>Klein, Stefan</creator><creator>van Walsum, Theo</creator><creator>Cardoso, João</creator><creator>Brea, Luisa Sánchez</creator><creator>Vaz, Pedro G</creator><general>Society of Photo-Optical Instrumentation Engineers</general><general>S P I E - International Society for</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F28</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>H8D</scope><scope>H8G</scope><scope>HCIFZ</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>LK8</scope><scope>L~C</scope><scope>L~D</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-4449-6784</orcidid><orcidid>https://orcid.org/0000-0001-5799-4163</orcidid><orcidid>https://orcid.org/0000-0002-4061-4846</orcidid><orcidid>https://orcid.org/0000-0003-3490-7789</orcidid></search><sort><creationdate>20220301</creationdate><title>Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications</title><author>Silva, Vania B ; Andrade De Jesus, Danilo ; Klein, Stefan ; van Walsum, Theo ; Cardoso, João ; Brea, Luisa Sánchez ; Vaz, Pedro G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c466t-805c7932c640e61c959e5cd1eb04446bd59781ddbfad824d628227b54eab1be83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Biomedical materials</topic><topic>Coherent light</topic><topic>Context</topic><topic>Image segmentation</topic><topic>Information retrieval</topic><topic>Light</topic><topic>Medical imaging</topic><topic>Optical Coherence Tomography</topic><topic>Optical communication</topic><topic>Phantoms, Imaging</topic><topic>Reproducibility of Results</topic><topic>Review Papers</topic><topic>Reviews</topic><topic>Signal processing</topic><topic>Speckle patterns</topic><topic>Tomography</topic><topic>Tomography, Optical Coherence - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Silva, Vania B</creatorcontrib><creatorcontrib>Andrade De Jesus, Danilo</creatorcontrib><creatorcontrib>Klein, Stefan</creatorcontrib><creatorcontrib>van Walsum, Theo</creatorcontrib><creatorcontrib>Cardoso, João</creatorcontrib><creatorcontrib>Brea, Luisa Sánchez</creatorcontrib><creatorcontrib>Vaz, Pedro G</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics &amp; Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical &amp; Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ANTE: Abstracts in New Technology &amp; Engineering</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>SciTech Premium Collection</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>ProQuest Biological Science Collection</collection><collection>Computer and Information Systems Abstracts – Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of biomedical optics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Silva, Vania B</au><au>Andrade De Jesus, Danilo</au><au>Klein, Stefan</au><au>van Walsum, Theo</au><au>Cardoso, João</au><au>Brea, Luisa Sánchez</au><au>Vaz, Pedro G</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications</atitle><jtitle>Journal of biomedical optics</jtitle><addtitle>J. Biomed. Opt</addtitle><date>2022-03-01</date><risdate>2022</risdate><volume>27</volume><issue>3</issue><spage>030901</spage><epage>030901</epage><pages>030901-030901</pages><issn>1083-3668</issn><eissn>1560-2281</eissn><abstract>Significance: Speckle has historically been considered a source of noise in coherent light imaging. However, a number of works in optical coherence tomography (OCT) imaging have shown that speckle patterns may contain relevant information regarding subresolution and structural properties of the tissues from which it is originated. Aim: The objective of this work is to provide a comprehensive overview of the methods developed for retrieving speckle information in biomedical OCT applications. Approach: PubMed and Scopus databases were used to perform a systematic review on studies published until December 9, 2021. From 146 screened studies, 40 were eligible for this review. Results: The studies were clustered according to the nature of their analysis, namely static or dynamic, and all features were described and analyzed. The results show that features retrieved from speckle can be used successfully in different applications, such as classification and segmentation. However, the results also show that speckle analysis is highly application-dependant, and the best approach varies between applications. Conclusions: Several of the reviewed analyses were only performed in a theoretical context or using phantoms, showing that signal-carrying speckle analysis in OCT imaging is still in its early stage, and further work is needed to validate its applicability and reproducibility in a clinical context.</abstract><cop>United States</cop><pub>Society of Photo-Optical Instrumentation Engineers</pub><pmid>35289154</pmid><doi>10.1117/1.JBO.27.3.030901</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0003-4449-6784</orcidid><orcidid>https://orcid.org/0000-0001-5799-4163</orcidid><orcidid>https://orcid.org/0000-0002-4061-4846</orcidid><orcidid>https://orcid.org/0000-0003-3490-7789</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1083-3668
ispartof Journal of biomedical optics, 2022-03, Vol.27 (3), p.030901-030901
issn 1083-3668
1560-2281
language eng
recordid cdi_pubmed_primary_35289154
source Publicly Available Content Database; SPIE Digital Library (Journals); PubMed Central
subjects Biomedical materials
Coherent light
Context
Image segmentation
Information retrieval
Light
Medical imaging
Optical Coherence Tomography
Optical communication
Phantoms, Imaging
Reproducibility of Results
Review Papers
Reviews
Signal processing
Speckle patterns
Tomography
Tomography, Optical Coherence - methods
title Signal-carrying speckle in optical coherence tomography: a methodological review on biomedical applications
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-17T11%3A39%3A10IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Signal-carrying%20speckle%20in%20optical%20coherence%20tomography:%20a%20methodological%20review%20on%20biomedical%20applications&rft.jtitle=Journal%20of%20biomedical%20optics&rft.au=Silva,%20Vania%20B&rft.date=2022-03-01&rft.volume=27&rft.issue=3&rft.spage=030901&rft.epage=030901&rft.pages=030901-030901&rft.issn=1083-3668&rft.eissn=1560-2281&rft_id=info:doi/10.1117/1.JBO.27.3.030901&rft_dat=%3Cproquest_pubme%3E2639226899%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c466t-805c7932c640e61c959e5cd1eb04446bd59781ddbfad824d628227b54eab1be83%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2862332718&rft_id=info:pmid/35289154&rfr_iscdi=true