Loading…

Theoretical analysis of the OH-initiated atmospheric oxidation reactions of imidazole

Imidazoles are present in Earth's atmosphere in both the gas-phase and in aerosol particles, and have been implicated in the formation of brown carbon aerosols. The gas-phase oxidation of imidazole (C 3 N 2 H 4 ) by hydroxyl radicals has been shown to be preferentially initiated via OH-addition...

Full description

Saved in:
Bibliographic Details
Published in:Physical chemistry chemical physics : PCCP 2024-09, Vol.26 (36), p.2357-23587
Main Authors: Golin Almeida, Thomas, Martí, Carles, Kurtén, Theo, Zádor, Judit, Johansen, Sommer L
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites cdi_FETCH-LOGICAL-c289t-a380d65238ff1e95b572607d2c0c1f70af6fda9d5181200a946362b3f019da73
container_end_page 23587
container_issue 36
container_start_page 2357
container_title Physical chemistry chemical physics : PCCP
container_volume 26
creator Golin Almeida, Thomas
Martí, Carles
Kurtén, Theo
Zádor, Judit
Johansen, Sommer L
description Imidazoles are present in Earth's atmosphere in both the gas-phase and in aerosol particles, and have been implicated in the formation of brown carbon aerosols. The gas-phase oxidation of imidazole (C 3 N 2 H 4 ) by hydroxyl radicals has been shown to be preferentially initiated via OH-addition to position C5, producing the 5-hydroxyimidazolyl radical adduct. However, the fate of this adduct upon reaction with O 2 in the atmospheric gas-phase is currently unknown. We employed an automated approach to investigate the reaction mechanism and kinetics of imidazole's OH-initiated gas-phase oxidation, in the presence of O 2 and NO x . The explored mechanism included reactions available to first-generation RO 2 radicals, as well as alkoxyl radicals produced from RO 2 + NO reactions. Product distributions were obtained by assembling and solving a master equation, under conditions relevant to the Earth's atmosphere. Our calculations show a complex, branched reaction mechanism, which nevertheless converges to yield two major closed-shell products: 4 H -imidazol-4-ol (4 H -4ol) and N , N ′-diformylformamidine (FMF). At 298 K and 1 atm, we estimate the yields of 4 H -4ol and FMF from imidazole oxidation initiated via OH-addition to position C5 to be 34 : 66, 12 : 85 and 2 : 95 under 10 ppt, 100 ppt and 1 ppb of NO respectively. This work also revealed O 2 -migration pathways between the α- N -imino peroxyl radical isomers. This reaction channel is fast for the first-generation RO 2 radicals, and may be important during the atmospheric oxidation of other unsaturated organic nitrogen compounds as well. Imidazole's gas-phase oxidation by OH radicals leads to the formation of two major closed-shell products, 4 H -imidazol-4-ol and N , N ′-diformylformamidine.
doi_str_mv 10.1039/d4cp02103g
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmed_primary_39106054</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3106346843</sourcerecordid><originalsourceid>FETCH-LOGICAL-c289t-a380d65238ff1e95b572607d2c0c1f70af6fda9d5181200a946362b3f019da73</originalsourceid><addsrcrecordid>eNpd0UtLAzEQB_AgitXqxbuy6EWE1cljHzlKfUJBD_W8pHnYyO6mJilYP72p1QqeMiS_DMz8ETrCcImB8ivF5BxIKl-30B5mJc051Gx7U1flAO2H8AYAuMB0Fw0ox1BCwfbQy2SmndfRStFmohftMtiQOZPFmc6eHnLb22hF1CoTsXNhPtPeysx9WCWidX3mtZCr4vuP7dL1p2v1Adoxog368Occosnd7WT0kI-f7h9H1-NckprHXNAaVFkQWhuDNS-mRUVKqBSRILGpQJjSKMFVgWtMAARP85RkSg1grkRFh-h03daFaJsgbdRyJl3faxkbwkiVJk7ofI3m3r0vdIhNZ4PUbSt67RahoVDztBVWFIme_aNvbuHTUpJKC6OsrBlN6mKtpHcheG2aubed8MsGQ7MKpLlho-fvQO4TPvlpuZh2Wm3obwIJHK-BD3Lz-pco_QIVAI4Y</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3106346843</pqid></control><display><type>article</type><title>Theoretical analysis of the OH-initiated atmospheric oxidation reactions of imidazole</title><source>Royal Society of Chemistry:Jisc Collections:Royal Society of Chemistry Read and Publish 2022-2024 (reading list)</source><creator>Golin Almeida, Thomas ; Martí, Carles ; Kurtén, Theo ; Zádor, Judit ; Johansen, Sommer L</creator><creatorcontrib>Golin Almeida, Thomas ; Martí, Carles ; Kurtén, Theo ; Zádor, Judit ; Johansen, Sommer L</creatorcontrib><description>Imidazoles are present in Earth's atmosphere in both the gas-phase and in aerosol particles, and have been implicated in the formation of brown carbon aerosols. The gas-phase oxidation of imidazole (C 3 N 2 H 4 ) by hydroxyl radicals has been shown to be preferentially initiated via OH-addition to position C5, producing the 5-hydroxyimidazolyl radical adduct. However, the fate of this adduct upon reaction with O 2 in the atmospheric gas-phase is currently unknown. We employed an automated approach to investigate the reaction mechanism and kinetics of imidazole's OH-initiated gas-phase oxidation, in the presence of O 2 and NO x . The explored mechanism included reactions available to first-generation RO 2 radicals, as well as alkoxyl radicals produced from RO 2 + NO reactions. Product distributions were obtained by assembling and solving a master equation, under conditions relevant to the Earth's atmosphere. Our calculations show a complex, branched reaction mechanism, which nevertheless converges to yield two major closed-shell products: 4 H -imidazol-4-ol (4 H -4ol) and N , N ′-diformylformamidine (FMF). At 298 K and 1 atm, we estimate the yields of 4 H -4ol and FMF from imidazole oxidation initiated via OH-addition to position C5 to be 34 : 66, 12 : 85 and 2 : 95 under 10 ppt, 100 ppt and 1 ppb of NO respectively. This work also revealed O 2 -migration pathways between the α- N -imino peroxyl radical isomers. This reaction channel is fast for the first-generation RO 2 radicals, and may be important during the atmospheric oxidation of other unsaturated organic nitrogen compounds as well. Imidazole's gas-phase oxidation by OH radicals leads to the formation of two major closed-shell products, 4 H -imidazol-4-ol and N , N ′-diformylformamidine.</description><identifier>ISSN: 1463-9076</identifier><identifier>ISSN: 1463-9084</identifier><identifier>EISSN: 1463-9084</identifier><identifier>DOI: 10.1039/d4cp02103g</identifier><identifier>PMID: 39106054</identifier><language>eng</language><publisher>England: Royal Society of Chemistry</publisher><subject>Earth atmosphere ; Hydroxyl radicals ; Imidazole ; Nitrogen compounds ; Oxidation ; Reaction kinetics ; Reaction mechanisms</subject><ispartof>Physical chemistry chemical physics : PCCP, 2024-09, Vol.26 (36), p.2357-23587</ispartof><rights>Copyright Royal Society of Chemistry 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c289t-a380d65238ff1e95b572607d2c0c1f70af6fda9d5181200a946362b3f019da73</cites><orcidid>0000-0002-9123-8238 ; 0000-0002-1794-1507 ; 0000-0003-3341-320X ; 0000000291238238 ; 000000033341320X ; 0000000217941507</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39106054$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/2427000$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Golin Almeida, Thomas</creatorcontrib><creatorcontrib>Martí, Carles</creatorcontrib><creatorcontrib>Kurtén, Theo</creatorcontrib><creatorcontrib>Zádor, Judit</creatorcontrib><creatorcontrib>Johansen, Sommer L</creatorcontrib><title>Theoretical analysis of the OH-initiated atmospheric oxidation reactions of imidazole</title><title>Physical chemistry chemical physics : PCCP</title><addtitle>Phys Chem Chem Phys</addtitle><description>Imidazoles are present in Earth's atmosphere in both the gas-phase and in aerosol particles, and have been implicated in the formation of brown carbon aerosols. The gas-phase oxidation of imidazole (C 3 N 2 H 4 ) by hydroxyl radicals has been shown to be preferentially initiated via OH-addition to position C5, producing the 5-hydroxyimidazolyl radical adduct. However, the fate of this adduct upon reaction with O 2 in the atmospheric gas-phase is currently unknown. We employed an automated approach to investigate the reaction mechanism and kinetics of imidazole's OH-initiated gas-phase oxidation, in the presence of O 2 and NO x . The explored mechanism included reactions available to first-generation RO 2 radicals, as well as alkoxyl radicals produced from RO 2 + NO reactions. Product distributions were obtained by assembling and solving a master equation, under conditions relevant to the Earth's atmosphere. Our calculations show a complex, branched reaction mechanism, which nevertheless converges to yield two major closed-shell products: 4 H -imidazol-4-ol (4 H -4ol) and N , N ′-diformylformamidine (FMF). At 298 K and 1 atm, we estimate the yields of 4 H -4ol and FMF from imidazole oxidation initiated via OH-addition to position C5 to be 34 : 66, 12 : 85 and 2 : 95 under 10 ppt, 100 ppt and 1 ppb of NO respectively. This work also revealed O 2 -migration pathways between the α- N -imino peroxyl radical isomers. This reaction channel is fast for the first-generation RO 2 radicals, and may be important during the atmospheric oxidation of other unsaturated organic nitrogen compounds as well. Imidazole's gas-phase oxidation by OH radicals leads to the formation of two major closed-shell products, 4 H -imidazol-4-ol and N , N ′-diformylformamidine.</description><subject>Earth atmosphere</subject><subject>Hydroxyl radicals</subject><subject>Imidazole</subject><subject>Nitrogen compounds</subject><subject>Oxidation</subject><subject>Reaction kinetics</subject><subject>Reaction mechanisms</subject><issn>1463-9076</issn><issn>1463-9084</issn><issn>1463-9084</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNpd0UtLAzEQB_AgitXqxbuy6EWE1cljHzlKfUJBD_W8pHnYyO6mJilYP72p1QqeMiS_DMz8ETrCcImB8ivF5BxIKl-30B5mJc051Gx7U1flAO2H8AYAuMB0Fw0ox1BCwfbQy2SmndfRStFmohftMtiQOZPFmc6eHnLb22hF1CoTsXNhPtPeysx9WCWidX3mtZCr4vuP7dL1p2v1Adoxog368Occosnd7WT0kI-f7h9H1-NckprHXNAaVFkQWhuDNS-mRUVKqBSRILGpQJjSKMFVgWtMAARP85RkSg1grkRFh-h03daFaJsgbdRyJl3faxkbwkiVJk7ofI3m3r0vdIhNZ4PUbSt67RahoVDztBVWFIme_aNvbuHTUpJKC6OsrBlN6mKtpHcheG2aubed8MsGQ7MKpLlho-fvQO4TPvlpuZh2Wm3obwIJHK-BD3Lz-pco_QIVAI4Y</recordid><startdate>20240918</startdate><enddate>20240918</enddate><creator>Golin Almeida, Thomas</creator><creator>Martí, Carles</creator><creator>Kurtén, Theo</creator><creator>Zádor, Judit</creator><creator>Johansen, Sommer L</creator><general>Royal Society of Chemistry</general><general>Royal Society of Chemistry (RSC)</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>L7M</scope><scope>7X8</scope><scope>OTOTI</scope><orcidid>https://orcid.org/0000-0002-9123-8238</orcidid><orcidid>https://orcid.org/0000-0002-1794-1507</orcidid><orcidid>https://orcid.org/0000-0003-3341-320X</orcidid><orcidid>https://orcid.org/0000000291238238</orcidid><orcidid>https://orcid.org/000000033341320X</orcidid><orcidid>https://orcid.org/0000000217941507</orcidid></search><sort><creationdate>20240918</creationdate><title>Theoretical analysis of the OH-initiated atmospheric oxidation reactions of imidazole</title><author>Golin Almeida, Thomas ; Martí, Carles ; Kurtén, Theo ; Zádor, Judit ; Johansen, Sommer L</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c289t-a380d65238ff1e95b572607d2c0c1f70af6fda9d5181200a946362b3f019da73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Earth atmosphere</topic><topic>Hydroxyl radicals</topic><topic>Imidazole</topic><topic>Nitrogen compounds</topic><topic>Oxidation</topic><topic>Reaction kinetics</topic><topic>Reaction mechanisms</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Golin Almeida, Thomas</creatorcontrib><creatorcontrib>Martí, Carles</creatorcontrib><creatorcontrib>Kurtén, Theo</creatorcontrib><creatorcontrib>Zádor, Judit</creatorcontrib><creatorcontrib>Johansen, Sommer L</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Physical chemistry chemical physics : PCCP</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Golin Almeida, Thomas</au><au>Martí, Carles</au><au>Kurtén, Theo</au><au>Zádor, Judit</au><au>Johansen, Sommer L</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Theoretical analysis of the OH-initiated atmospheric oxidation reactions of imidazole</atitle><jtitle>Physical chemistry chemical physics : PCCP</jtitle><addtitle>Phys Chem Chem Phys</addtitle><date>2024-09-18</date><risdate>2024</risdate><volume>26</volume><issue>36</issue><spage>2357</spage><epage>23587</epage><pages>2357-23587</pages><issn>1463-9076</issn><issn>1463-9084</issn><eissn>1463-9084</eissn><abstract>Imidazoles are present in Earth's atmosphere in both the gas-phase and in aerosol particles, and have been implicated in the formation of brown carbon aerosols. The gas-phase oxidation of imidazole (C 3 N 2 H 4 ) by hydroxyl radicals has been shown to be preferentially initiated via OH-addition to position C5, producing the 5-hydroxyimidazolyl radical adduct. However, the fate of this adduct upon reaction with O 2 in the atmospheric gas-phase is currently unknown. We employed an automated approach to investigate the reaction mechanism and kinetics of imidazole's OH-initiated gas-phase oxidation, in the presence of O 2 and NO x . The explored mechanism included reactions available to first-generation RO 2 radicals, as well as alkoxyl radicals produced from RO 2 + NO reactions. Product distributions were obtained by assembling and solving a master equation, under conditions relevant to the Earth's atmosphere. Our calculations show a complex, branched reaction mechanism, which nevertheless converges to yield two major closed-shell products: 4 H -imidazol-4-ol (4 H -4ol) and N , N ′-diformylformamidine (FMF). At 298 K and 1 atm, we estimate the yields of 4 H -4ol and FMF from imidazole oxidation initiated via OH-addition to position C5 to be 34 : 66, 12 : 85 and 2 : 95 under 10 ppt, 100 ppt and 1 ppb of NO respectively. This work also revealed O 2 -migration pathways between the α- N -imino peroxyl radical isomers. This reaction channel is fast for the first-generation RO 2 radicals, and may be important during the atmospheric oxidation of other unsaturated organic nitrogen compounds as well. Imidazole's gas-phase oxidation by OH radicals leads to the formation of two major closed-shell products, 4 H -imidazol-4-ol and N , N ′-diformylformamidine.</abstract><cop>England</cop><pub>Royal Society of Chemistry</pub><pmid>39106054</pmid><doi>10.1039/d4cp02103g</doi><tpages>18</tpages><orcidid>https://orcid.org/0000-0002-9123-8238</orcidid><orcidid>https://orcid.org/0000-0002-1794-1507</orcidid><orcidid>https://orcid.org/0000-0003-3341-320X</orcidid><orcidid>https://orcid.org/0000000291238238</orcidid><orcidid>https://orcid.org/000000033341320X</orcidid><orcidid>https://orcid.org/0000000217941507</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1463-9076
ispartof Physical chemistry chemical physics : PCCP, 2024-09, Vol.26 (36), p.2357-23587
issn 1463-9076
1463-9084
1463-9084
language eng
recordid cdi_pubmed_primary_39106054
source Royal Society of Chemistry:Jisc Collections:Royal Society of Chemistry Read and Publish 2022-2024 (reading list)
subjects Earth atmosphere
Hydroxyl radicals
Imidazole
Nitrogen compounds
Oxidation
Reaction kinetics
Reaction mechanisms
title Theoretical analysis of the OH-initiated atmospheric oxidation reactions of imidazole
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T16%3A23%3A13IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Theoretical%20analysis%20of%20the%20OH-initiated%20atmospheric%20oxidation%20reactions%20of%20imidazole&rft.jtitle=Physical%20chemistry%20chemical%20physics%20:%20PCCP&rft.au=Golin%20Almeida,%20Thomas&rft.date=2024-09-18&rft.volume=26&rft.issue=36&rft.spage=2357&rft.epage=23587&rft.pages=2357-23587&rft.issn=1463-9076&rft.eissn=1463-9084&rft_id=info:doi/10.1039/d4cp02103g&rft_dat=%3Cproquest_pubme%3E3106346843%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c289t-a380d65238ff1e95b572607d2c0c1f70af6fda9d5181200a946362b3f019da73%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=3106346843&rft_id=info:pmid/39106054&rfr_iscdi=true