Modeling collagen fibril degradation as a function of matrix microarchitecture

• Published in: Soft matter 2024-11, Vol.2 (46), p.9286-93
• Main Authors: Debnath, Bhanjan, Narasimhan, Badri Narayanan, Fraley, Stephanie I, Rangamani, Padmini
• Format: Article
• Language: English
• Subjects: Brownian motion; Collagen; Collagen - chemistry; Collagen - metabolism; Degradability; Degradation; Determinants; Enzymes; Extracellular Matrix - metabolism; Fibrils; Gels; Models, Biological; Nonuniformity; Pore size; Proteolysis; Thickness
• ISSN: 1744-683X; 1744-6848; 1744-6848
• DOI: 10.1039/d4sm00971a

Collagenolytic degradation is a process fundamental to tissue remodeling. The microarchitecture of collagen fibril networks changes during development, aging, and disease. Such changes to microarchitecture are often accompanied by changes in matrix degradability. In a matrix, the pore size and fibril characteristics such as length, diameter, number, orientation, and curvature are the major variables that define the microarchitecture. In vitro , collagen matrices of the same concentration but different microarchitectures also vary in degradation rate. How do different microarchitectures affect matrix degradation? To answer this question, we developed a computational model of collagen degradation. We first developed a lattice model that describes collagen degradation at the scale of a single fibril. We then extended this model to investigate the role of microarchitecture using Brownian dynamics simulation of enzymes in a multi-fibril three dimensional matrix to predict its degradability. Our simulations predict that the distribution of enzymes around the fibrils is non-uniform and depends on the microarchitecture of the matrix. This non-uniformity in enzyme distribution can lead to different extents of degradability for matrices of different microarchitectures. Our simulations predict that for the same enzyme concentration and collagen concentration, a matrix with thicker fibrils degrades more than that with thinner fibrils. Our model predictions were tested using in vitro experiments with synthetic collagen gels of different microarchitectures. Experiments showed that indeed degradation of collagen depends on the matrix architecture and fibril thickness. In summary, our study shows that the microarchitecture of the collagen matrix is an important determinant of its degradability. Modeling the enzymatic degradation of collagen fibrils.