A fast MR fingerprinting simulator for direct error estimation and sequence optimization

• Published in: Magnetic resonance imaging 2023-05, Vol.98, p.105-114
• Main Authors: Hu, Siyuan, Jordan, Stephen, Boyacioglu, Rasim, Rozada, Ignacio, Troyer, Matthias, Griswold, Mark, McGivney, Debra, Ma, Dan
• Format: Article
• Language: English
• Subjects: Accelerated simulation; Algorithms; Brain - diagnostic imaging; Humans; Image Processing, Computer-Assisted - methods; Magnetic resonance fingerprinting; Magnetic Resonance Imaging - methods; Magnetic Resonance Spectroscopy; Phantoms, Imaging; Sequence optimization; Undersampling artifacts
• ISSN: 0730-725X; 1873-5894; 1873-5894
• DOI: 10.1016/j.mri.2023.01.011

Magnetic resonance fingerprinting (MRF) is a novel quantitative MR technique that simultaneously provides multiple tissue property maps. When optimizing MRF scans, modeling undersampling errors and field imperfections in cost functions for direct measurement of quantitative errors will make the optimization results more practical and robust. However, optimizing such cost function is computationally expensive and impractical for MRF optimization with tens of thousands of iterations. Here, we introduce a fast MRF simulator to simulate aliased images from actual scan scenarios including undersampling and system imperfections, which substantially reduces computational time and allows for direct error estimation of the quantitative maps and efficient sequence optimization. We evaluate the performance and computational speed of the proposed approach by simulations and in vivo experiments. The simulations from the proposed method closely approximate the signals and MRF maps from in vivo scans, with 158 times shorter processing time than the conventional simulation method using Non-uniform Fourier transform. We also demonstrate the power of applying the fast MRF simulator in MRF sequence optimization. The optimized sequences are validated with in vivo scans to assess the image quality and accuracy. The optimized sequences produce artifact-free T1 and T2 maps in 2D and 3D scans with equivalent mapping accuracy as the human-designed sequence but at shorter scan times. Incorporating the proposed simulator in the MRF optimization framework makes direct estimation of undersampling errors during the optimization process feasible, and provide optimized MRF sequences that are robust against undersampling artifacts and field inhomogeneity.