Hippocampal RNA sequencing in mice selectively bred for high and low activity

• Published in: Genes, brain and behavior brain and behavior, 2023-04, Vol.22 (2), p.e12832-n/a
• Main Authors: Booher, Winona C., Vanderlinden, Lauren A., Hall, Lucy A., Thomas, Aimee L., Evans, Luke M., Saba, Laura M., Ehringer, Marissa A.
• Format: Article
• Language: English
• Subjects: Animals; Anxiety; Anxiety - genetics; Anxiety disorders; behavioral battery; Brain; Cytochrome c; enrichment analysis; Female; Gene set enrichment analysis; Genes; Hippocampus; Inbreeding; Mice; Mitochondria; open‐field activity (OFA); Original; Oxidative phosphorylation; PANTHER; Phosphorylation; quantitative trait loci (QTL); RNA‐sequencing; Sequence Analysis, RNA; Supernumerary; wheel running
• ISSN: 1601-1848; 1601-183X
• DOI: 10.1111/gbb.12832

High and Low Activity strains of mice were bidirectionally selected for differences in open‐field activity (DeFries et al., 1978, Behavior Genetics, 8: 3–13) and subsequently inbred to use as a genetic model for studying anxiety‐like behaviors (Booher et al., 2021, Genes, Brain and Behavior, 20: e12730). Hippocampal RNA‐sequencing of the High and Low Activity mice identified 3901 differentially expressed protein‐coding genes, with both sex‐dependent and sex‐independent effects. Functional enrichment analysis (PANTHER) highlighted 15 gene ontology terms, which allowed us to create a narrow list of 264 top candidate genes. Of the top candidate genes, 46 encoded four Complexes (I, II, IV and V) and two electron carriers (cytochrome c and ubiquinone) of the mitochondrial oxidative phosphorylation process. The most striking results were in the female high anxiety, Low Activity mice, where 39/46 genes relating to oxidative phosphorylation were upregulated. In addition, comparison of our top candidate genes with two previously curated High and Low Activity gene lists highlight 24 overlapping genes, where Ndufa13, which encodes the supernumerary subunit A13 of complex I, was the only gene to be included in all three lists. Mitochondrial dysfunction has recently been implicated as both a cause and effect of anxiety‐related disorders and thus should be further explored as a possible novel pharmaceutical treatment for anxiety disorders. Overview of differentially expressed genes by strain and sex.