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Complete Mitochondrial Genome of Piophila casei (Diptera: Piophilidae): Genome Description and Phylogenetic Implications
is a flesh-feeding Diptera insect that adversely affects foodstuffs, such as dry-cured ham and cheese, and decaying human and animal carcasses. However, the unknown mitochondrial genome of can provide information on its genetic structure and phylogenetic position, which is of great significance to t...
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| Published in: | Genes 2023-04, Vol.14 (4), p.883 |
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| Main Authors: | , , , , , , |
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| container_issue | 4 |
| container_start_page | 883 |
| container_title | Genes |
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| creator | Bi, Shenghui Song, Yanfei Liu, Linggao Wan, Jing Zhou, Ying Zhu, Qiujin Liu, Jianfeng |
| description | is a flesh-feeding Diptera insect that adversely affects foodstuffs, such as dry-cured ham and cheese, and decaying human and animal carcasses. However, the unknown mitochondrial genome of
can provide information on its genetic structure and phylogenetic position, which is of great significance to the research on its prevention and control. Therefore, we sequenced, annotated, and analyzed the previously unknown complete mitochondrial genome of
. The complete mt genome of
is a typical circular DNA, 15,785 bp in length, with a high A + T content of 76.6%. It contains 13 protein-coding genes (PCG), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and 1 control region. Phylogenetic analysis of 25 Diptera species was conducted using Bayesian and maximum likelihood methods, and their divergence times were inferred. The comparison of the mt genomes from two morphologically similar insects
and
indicates a divergence time of 7.28 MYA between these species. The study provides a reference for understanding the forensic medicine, taxonomy, and genetics of
. |
| doi_str_mv | 10.3390/genes14040883 |
| format | article |
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can provide information on its genetic structure and phylogenetic position, which is of great significance to the research on its prevention and control. Therefore, we sequenced, annotated, and analyzed the previously unknown complete mitochondrial genome of
. The complete mt genome of
is a typical circular DNA, 15,785 bp in length, with a high A + T content of 76.6%. It contains 13 protein-coding genes (PCG), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and 1 control region. Phylogenetic analysis of 25 Diptera species was conducted using Bayesian and maximum likelihood methods, and their divergence times were inferred. The comparison of the mt genomes from two morphologically similar insects
and
indicates a divergence time of 7.28 MYA between these species. The study provides a reference for understanding the forensic medicine, taxonomy, and genetics of
.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes14040883</identifier><identifier>PMID: 37107641</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Adults ; Animals ; Bayes Theorem ; Bayesian analysis ; Circular DNA ; Diptera ; Diptera - genetics ; Divergence ; Forensic science ; Genes ; Genetic structure ; Genetic testing ; Genome, Mitochondrial - genetics ; Genomes ; Humans ; Insecta - genetics ; Insects ; Mitochondria ; Phylogenetics ; Phylogeny ; Piophila casei ; Proteins ; rRNA ; Transfer RNA ; Trees ; tRNA</subject><ispartof>Genes, 2023-04, Vol.14 (4), p.883</ispartof><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c416t-b16e8db3351bcb4e96dc9be63299cc7e3c94e4811a53643b0114f7509db690dd3</citedby><cites>FETCH-LOGICAL-c416t-b16e8db3351bcb4e96dc9be63299cc7e3c94e4811a53643b0114f7509db690dd3</cites><orcidid>0000-0003-1589-9605 ; 0000-0002-0392-4992 ; 0000-0002-7775-6362</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2806545424/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2806545424?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,25734,27905,27906,36993,36994,44571,53772,53774,74875</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37107641$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bi, Shenghui</creatorcontrib><creatorcontrib>Song, Yanfei</creatorcontrib><creatorcontrib>Liu, Linggao</creatorcontrib><creatorcontrib>Wan, Jing</creatorcontrib><creatorcontrib>Zhou, Ying</creatorcontrib><creatorcontrib>Zhu, Qiujin</creatorcontrib><creatorcontrib>Liu, Jianfeng</creatorcontrib><title>Complete Mitochondrial Genome of Piophila casei (Diptera: Piophilidae): Genome Description and Phylogenetic Implications</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>is a flesh-feeding Diptera insect that adversely affects foodstuffs, such as dry-cured ham and cheese, and decaying human and animal carcasses. However, the unknown mitochondrial genome of
can provide information on its genetic structure and phylogenetic position, which is of great significance to the research on its prevention and control. Therefore, we sequenced, annotated, and analyzed the previously unknown complete mitochondrial genome of
. The complete mt genome of
is a typical circular DNA, 15,785 bp in length, with a high A + T content of 76.6%. It contains 13 protein-coding genes (PCG), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and 1 control region. Phylogenetic analysis of 25 Diptera species was conducted using Bayesian and maximum likelihood methods, and their divergence times were inferred. The comparison of the mt genomes from two morphologically similar insects
and
indicates a divergence time of 7.28 MYA between these species. The study provides a reference for understanding the forensic medicine, taxonomy, and genetics of
.</description><subject>Adults</subject><subject>Animals</subject><subject>Bayes Theorem</subject><subject>Bayesian analysis</subject><subject>Circular DNA</subject><subject>Diptera</subject><subject>Diptera - genetics</subject><subject>Divergence</subject><subject>Forensic science</subject><subject>Genes</subject><subject>Genetic structure</subject><subject>Genetic testing</subject><subject>Genome, Mitochondrial - genetics</subject><subject>Genomes</subject><subject>Humans</subject><subject>Insecta - genetics</subject><subject>Insects</subject><subject>Mitochondria</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Piophila casei</subject><subject>Proteins</subject><subject>rRNA</subject><subject>Transfer RNA</subject><subject>Trees</subject><subject>tRNA</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpdkc1LxDAQxYMoKurRqwS86KGaNGnTeBFZP0HRg55Dmsy6kTapSVf0v7dld0XNZQLvN29meAjtU3LCmCSnr-AhUU44qSq2hrZzIljGeV6s__pvob2U3sjwOMkJKTbRFhOUiJLTbfQ5CW3XQA_4wfXBzIK30ekG34APLeAwxU8udDPXaGx0AoePLl3XQ9RnK8FZDcdnq4ZLSCYOhAsea2_x0-yrCeOavTP4bhjljB7FtIs2prpJsLesO-jl-up5cpvdP97cTS7uM8Np2Wc1LaGyNWMFrU3NQZbWyBpKlktpjABmJAdeUaoLVnJWE0r5VBRE2rqUxFq2g84Xvt28bsEa8H3Ujeqia3X8UkE79VfxbqZew4eihDIhOB8cjpYOMbzPIfWqdclA02gPYZ5UXhEhqajyYkAP_6FvYR79cN9IlQUveD4aZgvKxJBShOnPNpSoMVf1J9eBP_h9wg-9SpF9AyB0n_4</recordid><startdate>20230408</startdate><enddate>20230408</enddate><creator>Bi, Shenghui</creator><creator>Song, Yanfei</creator><creator>Liu, Linggao</creator><creator>Wan, Jing</creator><creator>Zhou, Ying</creator><creator>Zhu, Qiujin</creator><creator>Liu, Jianfeng</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-1589-9605</orcidid><orcidid>https://orcid.org/0000-0002-0392-4992</orcidid><orcidid>https://orcid.org/0000-0002-7775-6362</orcidid></search><sort><creationdate>20230408</creationdate><title>Complete Mitochondrial Genome of Piophila casei (Diptera: Piophilidae): Genome Description and Phylogenetic Implications</title><author>Bi, Shenghui ; Song, Yanfei ; Liu, Linggao ; Wan, Jing ; Zhou, Ying ; Zhu, Qiujin ; Liu, Jianfeng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c416t-b16e8db3351bcb4e96dc9be63299cc7e3c94e4811a53643b0114f7509db690dd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Adults</topic><topic>Animals</topic><topic>Bayes Theorem</topic><topic>Bayesian analysis</topic><topic>Circular DNA</topic><topic>Diptera</topic><topic>Diptera - genetics</topic><topic>Divergence</topic><topic>Forensic science</topic><topic>Genes</topic><topic>Genetic structure</topic><topic>Genetic testing</topic><topic>Genome, Mitochondrial - genetics</topic><topic>Genomes</topic><topic>Humans</topic><topic>Insecta - genetics</topic><topic>Insects</topic><topic>Mitochondria</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Piophila casei</topic><topic>Proteins</topic><topic>rRNA</topic><topic>Transfer RNA</topic><topic>Trees</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bi, Shenghui</creatorcontrib><creatorcontrib>Song, Yanfei</creatorcontrib><creatorcontrib>Liu, Linggao</creatorcontrib><creatorcontrib>Wan, Jing</creatorcontrib><creatorcontrib>Zhou, Ying</creatorcontrib><creatorcontrib>Zhu, Qiujin</creatorcontrib><creatorcontrib>Liu, Jianfeng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bi, Shenghui</au><au>Song, Yanfei</au><au>Liu, Linggao</au><au>Wan, Jing</au><au>Zhou, Ying</au><au>Zhu, Qiujin</au><au>Liu, Jianfeng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete Mitochondrial Genome of Piophila casei (Diptera: Piophilidae): Genome Description and Phylogenetic Implications</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2023-04-08</date><risdate>2023</risdate><volume>14</volume><issue>4</issue><spage>883</spage><pages>883-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>is a flesh-feeding Diptera insect that adversely affects foodstuffs, such as dry-cured ham and cheese, and decaying human and animal carcasses. However, the unknown mitochondrial genome of
can provide information on its genetic structure and phylogenetic position, which is of great significance to the research on its prevention and control. Therefore, we sequenced, annotated, and analyzed the previously unknown complete mitochondrial genome of
. The complete mt genome of
is a typical circular DNA, 15,785 bp in length, with a high A + T content of 76.6%. It contains 13 protein-coding genes (PCG), 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and 1 control region. Phylogenetic analysis of 25 Diptera species was conducted using Bayesian and maximum likelihood methods, and their divergence times were inferred. The comparison of the mt genomes from two morphologically similar insects
and
indicates a divergence time of 7.28 MYA between these species. The study provides a reference for understanding the forensic medicine, taxonomy, and genetics of
.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>37107641</pmid><doi>10.3390/genes14040883</doi><orcidid>https://orcid.org/0000-0003-1589-9605</orcidid><orcidid>https://orcid.org/0000-0002-0392-4992</orcidid><orcidid>https://orcid.org/0000-0002-7775-6362</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | Genes, 2023-04, Vol.14 (4), p.883 |
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| source | Publicly Available Content Database; PubMed Central |
| subjects | Adults Animals Bayes Theorem Bayesian analysis Circular DNA Diptera Diptera - genetics Divergence Forensic science Genes Genetic structure Genetic testing Genome, Mitochondrial - genetics Genomes Humans Insecta - genetics Insects Mitochondria Phylogenetics Phylogeny Piophila casei Proteins rRNA Transfer RNA Trees tRNA |
| title | Complete Mitochondrial Genome of Piophila casei (Diptera: Piophilidae): Genome Description and Phylogenetic Implications |
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