A Chromosome-Level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae)

Abstract Andrena camellia, an effective pollinator of the economically significant crop Camellia oleifera, can withstand the toxic pollen of C. oleifera, making An. camellia crucial for resource conservation and cultivation of C. oleifera. In this study, the whole genome of An. camellia was sequence...

Full description

Saved in:
Bibliographic Details
Published in:Genome biology and evolution 2023-05, Vol.15 (5)
Main Authors: Zhao, Kaixuan, Luo, Arong, Zhou, Qingsong, Wei, Wei, Liu, Wenping, Zhu, Chaodong, Niu, Zeqing, Zhou, Zeyang, Huang, Dunyuan
Format: Article
Language:English
Subjects:
Genome Report
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c413t-1b64db091b428415b55ac4118f2570125ae66068ff534c1d3ce08695253bda0a3
cites cdi_FETCH-LOGICAL-c413t-1b64db091b428415b55ac4118f2570125ae66068ff534c1d3ce08695253bda0a3
container_end_page
container_issue 5
container_start_page
container_title Genome biology and evolution
container_volume 15
creator Zhao, Kaixuan
Luo, Arong
Zhou, Qingsong
Wei, Wei
Liu, Wenping
Zhu, Chaodong
Niu, Zeqing
Zhou, Zeyang
Huang, Dunyuan
description Abstract Andrena camellia, an effective pollinator of the economically significant crop Camellia oleifera, can withstand the toxic pollen of C. oleifera, making An. camellia crucial for resource conservation and cultivation of C. oleifera. In this study, the whole genome of An. camellia was sequenced on the Oxford Nanopore platform. The assembled genome size was 340.73 Mb including 50 scaffolds (N50 = 47.435 Mb) and 131 contigs (N50 = 17.2 Mb). A total of 11,258 protein-coding genes were annotated; in addition, 1,104 noncoding RNAs were identified. Further analysis shows that some chromosomes of An. camellia have a high level of synteny with those of Apis mellifera, Osmia bicornis, and Andrena minutula. Thus, our reported genome of An. camellia serves as a valuable resource for studying species evolution, behavioral biology, and adaption to toxic pollen of C. oleifera.
doi_str_mv 10.1093/gbe/evad080
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10210616</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1093/gbe/evad080</oup_id><sourcerecordid>2813567194</sourcerecordid><originalsourceid>FETCH-LOGICAL-c413t-1b64db091b428415b55ac4118f2570125ae66068ff534c1d3ce08695253bda0a3</originalsourceid><addsrcrecordid>eNp9kc1LxDAQxYMofp-8S06iSDXTNGnrRZbFL1jwoucwbadrpW3WpF3Y_97IrqIXT5nwfvNmhsfYCYgrELm8nhd0TUusRCa22D6kKo-0VnL7V73HDrx_F0LrRMtdtidTSEUOYp_NJ3z65mxnve0omtGSWv5AffjwiffUFe2KY1_xu6Vtx6GxPZ_02K5847mtQ1056pGX2FHbNsjPH1dd6F4M5PBmIzcV0sUR26mx9XS8eQ_Z6_3dy_Qxmj0_PE0ns6hMQA4RFDqpirBakcRZAqpQCoMCWR2rVECskLQWOqtrJZMSKlmSyHSuYiWLCgXKQ3a79l2MRUdVSf3gsDUL13ToVsZiY_4qffNm5nZpQMQgNOjgcL5xcPZjJD-YrvFlOA97sqM3cQZS6RTyJKCXa7R01ntH9c8cEOYrGxOyMZtsAn36e7Uf9juMAJytATsu_nX6BAl9mM8</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2813567194</pqid></control><display><type>article</type><title>A Chromosome-Level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae)</title><source>OUP_牛津大学出版社OA刊</source><source>PubMed Central</source><creator>Zhao, Kaixuan ; Luo, Arong ; Zhou, Qingsong ; Wei, Wei ; Liu, Wenping ; Zhu, Chaodong ; Niu, Zeqing ; Zhou, Zeyang ; Huang, Dunyuan</creator><contributor>Wheat, Christopher</contributor><creatorcontrib>Zhao, Kaixuan ; Luo, Arong ; Zhou, Qingsong ; Wei, Wei ; Liu, Wenping ; Zhu, Chaodong ; Niu, Zeqing ; Zhou, Zeyang ; Huang, Dunyuan ; Wheat, Christopher</creatorcontrib><description>Abstract Andrena camellia, an effective pollinator of the economically significant crop Camellia oleifera, can withstand the toxic pollen of C. oleifera, making An. camellia crucial for resource conservation and cultivation of C. oleifera. In this study, the whole genome of An. camellia was sequenced on the Oxford Nanopore platform. The assembled genome size was 340.73 Mb including 50 scaffolds (N50 = 47.435 Mb) and 131 contigs (N50 = 17.2 Mb). A total of 11,258 protein-coding genes were annotated; in addition, 1,104 noncoding RNAs were identified. Further analysis shows that some chromosomes of An. camellia have a high level of synteny with those of Apis mellifera, Osmia bicornis, and Andrena minutula. Thus, our reported genome of An. camellia serves as a valuable resource for studying species evolution, behavioral biology, and adaption to toxic pollen of C. oleifera.</description><identifier>ISSN: 1759-6653</identifier><identifier>EISSN: 1759-6653</identifier><identifier>DOI: 10.1093/gbe/evad080</identifier><identifier>PMID: 37170910</identifier><language>eng</language><publisher>US: Oxford University Press</publisher><subject>Genome Report</subject><ispartof>Genome biology and evolution, 2023-05, Vol.15 (5)</ispartof><rights>The Author(s) 2023. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. 2023</rights><rights>The Author(s) 2023. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c413t-1b64db091b428415b55ac4118f2570125ae66068ff534c1d3ce08695253bda0a3</citedby><cites>FETCH-LOGICAL-c413t-1b64db091b428415b55ac4118f2570125ae66068ff534c1d3ce08695253bda0a3</cites><orcidid>0000-0002-9347-3178</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10210616/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10210616/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,1604,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37170910$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Wheat, Christopher</contributor><creatorcontrib>Zhao, Kaixuan</creatorcontrib><creatorcontrib>Luo, Arong</creatorcontrib><creatorcontrib>Zhou, Qingsong</creatorcontrib><creatorcontrib>Wei, Wei</creatorcontrib><creatorcontrib>Liu, Wenping</creatorcontrib><creatorcontrib>Zhu, Chaodong</creatorcontrib><creatorcontrib>Niu, Zeqing</creatorcontrib><creatorcontrib>Zhou, Zeyang</creatorcontrib><creatorcontrib>Huang, Dunyuan</creatorcontrib><title>A Chromosome-Level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae)</title><title>Genome biology and evolution</title><addtitle>Genome Biol Evol</addtitle><description>Abstract Andrena camellia, an effective pollinator of the economically significant crop Camellia oleifera, can withstand the toxic pollen of C. oleifera, making An. camellia crucial for resource conservation and cultivation of C. oleifera. In this study, the whole genome of An. camellia was sequenced on the Oxford Nanopore platform. The assembled genome size was 340.73 Mb including 50 scaffolds (N50 = 47.435 Mb) and 131 contigs (N50 = 17.2 Mb). A total of 11,258 protein-coding genes were annotated; in addition, 1,104 noncoding RNAs were identified. Further analysis shows that some chromosomes of An. camellia have a high level of synteny with those of Apis mellifera, Osmia bicornis, and Andrena minutula. Thus, our reported genome of An. camellia serves as a valuable resource for studying species evolution, behavioral biology, and adaption to toxic pollen of C. oleifera.</description><subject>Genome Report</subject><issn>1759-6653</issn><issn>1759-6653</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>TOX</sourceid><recordid>eNp9kc1LxDAQxYMofp-8S06iSDXTNGnrRZbFL1jwoucwbadrpW3WpF3Y_97IrqIXT5nwfvNmhsfYCYgrELm8nhd0TUusRCa22D6kKo-0VnL7V73HDrx_F0LrRMtdtidTSEUOYp_NJ3z65mxnve0omtGSWv5AffjwiffUFe2KY1_xu6Vtx6GxPZ_02K5847mtQ1056pGX2FHbNsjPH1dd6F4M5PBmIzcV0sUR26mx9XS8eQ_Z6_3dy_Qxmj0_PE0ns6hMQA4RFDqpirBakcRZAqpQCoMCWR2rVECskLQWOqtrJZMSKlmSyHSuYiWLCgXKQ3a79l2MRUdVSf3gsDUL13ToVsZiY_4qffNm5nZpQMQgNOjgcL5xcPZjJD-YrvFlOA97sqM3cQZS6RTyJKCXa7R01ntH9c8cEOYrGxOyMZtsAn36e7Uf9juMAJytATsu_nX6BAl9mM8</recordid><startdate>20230512</startdate><enddate>20230512</enddate><creator>Zhao, Kaixuan</creator><creator>Luo, Arong</creator><creator>Zhou, Qingsong</creator><creator>Wei, Wei</creator><creator>Liu, Wenping</creator><creator>Zhu, Chaodong</creator><creator>Niu, Zeqing</creator><creator>Zhou, Zeyang</creator><creator>Huang, Dunyuan</creator><general>Oxford University Press</general><scope>TOX</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-9347-3178</orcidid></search><sort><creationdate>20230512</creationdate><title>A Chromosome-Level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae)</title><author>Zhao, Kaixuan ; Luo, Arong ; Zhou, Qingsong ; Wei, Wei ; Liu, Wenping ; Zhu, Chaodong ; Niu, Zeqing ; Zhou, Zeyang ; Huang, Dunyuan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c413t-1b64db091b428415b55ac4118f2570125ae66068ff534c1d3ce08695253bda0a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Genome Report</topic><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Kaixuan</creatorcontrib><creatorcontrib>Luo, Arong</creatorcontrib><creatorcontrib>Zhou, Qingsong</creatorcontrib><creatorcontrib>Wei, Wei</creatorcontrib><creatorcontrib>Liu, Wenping</creatorcontrib><creatorcontrib>Zhu, Chaodong</creatorcontrib><creatorcontrib>Niu, Zeqing</creatorcontrib><creatorcontrib>Zhou, Zeyang</creatorcontrib><creatorcontrib>Huang, Dunyuan</creatorcontrib><collection>OUP_牛津大学出版社OA刊</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genome biology and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Kaixuan</au><au>Luo, Arong</au><au>Zhou, Qingsong</au><au>Wei, Wei</au><au>Liu, Wenping</au><au>Zhu, Chaodong</au><au>Niu, Zeqing</au><au>Zhou, Zeyang</au><au>Huang, Dunyuan</au><au>Wheat, Christopher</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Chromosome-Level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae)</atitle><jtitle>Genome biology and evolution</jtitle><addtitle>Genome Biol Evol</addtitle><date>2023-05-12</date><risdate>2023</risdate><volume>15</volume><issue>5</issue><issn>1759-6653</issn><eissn>1759-6653</eissn><abstract>Abstract Andrena camellia, an effective pollinator of the economically significant crop Camellia oleifera, can withstand the toxic pollen of C. oleifera, making An. camellia crucial for resource conservation and cultivation of C. oleifera. In this study, the whole genome of An. camellia was sequenced on the Oxford Nanopore platform. The assembled genome size was 340.73 Mb including 50 scaffolds (N50 = 47.435 Mb) and 131 contigs (N50 = 17.2 Mb). A total of 11,258 protein-coding genes were annotated; in addition, 1,104 noncoding RNAs were identified. Further analysis shows that some chromosomes of An. camellia have a high level of synteny with those of Apis mellifera, Osmia bicornis, and Andrena minutula. Thus, our reported genome of An. camellia serves as a valuable resource for studying species evolution, behavioral biology, and adaption to toxic pollen of C. oleifera.</abstract><cop>US</cop><pub>Oxford University Press</pub><pmid>37170910</pmid><doi>10.1093/gbe/evad080</doi><orcidid>https://orcid.org/0000-0002-9347-3178</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1759-6653
ispartof Genome biology and evolution, 2023-05, Vol.15 (5)
issn 1759-6653
1759-6653
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10210616
source OUP_牛津大学出版社OA刊; PubMed Central
subjects Genome Report
title A Chromosome-Level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae)
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-08T01%3A44%3A42IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20Chromosome-Level%20Genome%20Assembly%20and%20Evolution%20Analysis%20of%20Andrena%20camellia%20(Hymenoptera:%20Andrenidae)&rft.jtitle=Genome%20biology%20and%20evolution&rft.au=Zhao,%20Kaixuan&rft.date=2023-05-12&rft.volume=15&rft.issue=5&rft.issn=1759-6653&rft.eissn=1759-6653&rft_id=info:doi/10.1093/gbe/evad080&rft_dat=%3Cproquest_pubme%3E2813567194%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c413t-1b64db091b428415b55ac4118f2570125ae66068ff534c1d3ce08695253bda0a3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2813567194&rft_id=info:pmid/37170910&rft_oup_id=10.1093/gbe/evad080&rfr_iscdi=true