A DNAzyme-enhanced nonlinear hybridization chain reaction for sensitive detection of microRNA

• Published in: The Journal of biological chemistry 2023-06, Vol.299 (6), p.104751-104751, Article 104751
• Main Authors: Cao, Xiuen, Dong, Jiani, Sun, Ruowei, Zhang, Xun, Chen, Chuanpin, Zhu, Qubo
• Format: Article
• Language: English
• Subjects: bioanalysis; Biomarkers; Biosensing Techniques - methods; branched hybridization chain reaction; DNA, Catalytic - chemistry; DNAzyme; Humans; isothermal amplification technique; Limit of Detection; microRNA; MicroRNAs - analysis; MicroRNAs - genetics; Nucleic Acid Hybridization; Reproducibility of Results
• ISSN: 0021-9258; 1083-351X
• DOI: 10.1016/j.jbc.2023.104751

As a typical biomarker, the expression of microRNA is closely related to the occurrence of cancer. However, in recent years, the detection methods have had some limitations in the research and application of microRNAs. In this paper, an autocatalytic platform was constructed through the combination of a nonlinear hybridization chain reaction and DNAzyme to achieve efficient detection of microRNA-21. Fluorescently labeled fuel probes can form branched nanostructures and new DNAzyme under the action of the target, and the newly formed DNAzyme can trigger a new round of reactions, resulting in enhanced fluorescence signals. This platform is a simple, efficient, fast, low-cost, and selective method for the detection of microRNA-21, which can detect microRNA-21 at concentrations as low as 0.004 nM and can distinguish sequence differences by single-base differences. In tissue samples from patients with liver cancer, the platform shows the same detection accuracy as real-time PCR but with better reproducibility. In addition, through the flexible design of the trigger chain, our method could be adapted to detect other nucleic acid biomarkers.