Analyzing microbial communities and their biodegradation of multiple pharmaceuticals in membrane bioreactors

• Published in: Applied microbiology and biotechnology 2023-09, Vol.107 (17), p.5545-5554
• Main Authors: Suleiman, Marcel, Demaria, Francesca, Zimmardi, Cristina, Kolvenbach, Boris Alexander, Corvini, Philippe François-Xavier
• Format: Article
• Language: English
• Subjects: Achromobacter; Analgesics; Atenolol; Batch culture; Bioactive compounds; Biodegradation; Biological activity; Biomedical and Life Sciences; Bioreactors; Biotechnology; Caffeine; Combinatorial analysis; Community structure; Diclofenac; Drugs; Environmental Biotechnology; Feasibility studies; Ibuprofen; Inoculum; Klebsiella; Life Sciences; Liquid chromatography; Membranes; Methods; Microbial activity; Microbial colonies; Microbial Genetics and Genomics; Microbiology; Microbiomes; Microorganisms; Micropollutants; Mixtures; Nonsteroidal anti-inflammatory drugs; Paracetamol; Pharmaceuticals; Physiological aspects; Players; Pollutants; Pseudomonas; Risk assessment; rRNA 16S; Substrates; Uranium
• ISSN: 0175-7598; 1432-0614
• DOI: 10.1007/s00253-023-12677-z

Pharmaceuticals are of concern to our planet and health as they can accumulate in the environment. The impact of these biologically active compounds on ecosystems is hard to predict, and information on their biodegradation is necessary to establish sound risk assessment. Microbial communities are promising candidates for the biodegradation of pharmaceuticals such as ibuprofen, but little is known yet about their degradation capacity of multiple micropollutants at higher concentrations (100 mg/L). In this work, microbial communities were cultivated in lab-scale membrane bioreactors (MBRs) exposed to increasing concentrations of a mixture of six micropollutants (ibuprofen, diclofenac, enalapril, caffeine, atenolol, paracetamol). Key players of biodegradation were identified using a combinatorial approach of 16S rRNA sequencing and analytics. Microbial community structure changed with increasing pharmaceutical intake (from 1 to 100 mg/L) and reached a steady-state during incubation for 7 weeks on 100 mg/L. HPLC analysis revealed a fluctuating but significant degradation (30–100%) of five pollutants (caffeine, paracetamol, ibuprofen, atenolol, enalapril) by an established and stable microbial community mainly composed of Achromobacter , Cupriavidus , Pseudomonas and Leucobacter . By using the microbial community from MBR1 as inoculum for further batch culture experiments on single micropollutants (400 mg/L substrate, respectively), different active microbial consortia were obtained for each single micropollutant. Microbial genera potentially responsible for degradation of the respective micropollutant were identified, i.e. Pseudomonas sp. and Sphingobacterium sp. for ibuprofen, caffeine and paracetamol, Sphingomonas sp. for atenolol and Klebsiella sp. for enalapril. Our study demonstrates the feasibility of cultivating stable microbial communities capable of degrading simultaneously a mixture of highly concentrated pharmaceuticals in lab-scale MBRs and the identification of microbial genera potentially responsible for the degradation of specific pollutants. Key points • Multiple pharmaceuticals were removed by stable microbial communities. • Microbial key players of five main pharmaceuticals were identified.