Loading…

Thermal versus photochemical tautomerization of cytosine and guanine: a BLYP computational study along the IRC curves

We performed a theoretical study, at the BLYP/aug-cc-pVDZ theoretical level, of the mechanisms of H-transfer between biologically relevant tautomers of cytosine and guanine. The analysis of the ground- and excited state energy barriers of the conversions showed that in some cases they are lower as c...

Full description

Saved in:
Bibliographic Details
Published in:Turkish journal of chemistry 2022-01, Vol.46 (6), p.1909-1917
Main Authors: CHERNEVA, TSVETINA, DELCHEV, VASSIL
Format: Article
Language:English
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites
container_end_page 1917
container_issue 6
container_start_page 1909
container_title Turkish journal of chemistry
container_volume 46
creator CHERNEVA, TSVETINA
DELCHEV, VASSIL
description We performed a theoretical study, at the BLYP/aug-cc-pVDZ theoretical level, of the mechanisms of H-transfer between biologically relevant tautomers of cytosine and guanine. The analysis of the ground- and excited state energy barriers of the conversions showed that in some cases they are lower as compared to the ground state reactions. The inclusion of one water molecule as a catalyst in the oxo-amino form of cytosine and guanine drastically changes the mechanism of the reactions in the ground as well as in the excited state. For example, the ground state reaction path of cytosine reduces the energy barrier from 165 to 60 kJ.mol −1 and for guanine, this reduction is from 92 kJ.mol −1 to 24 kJ.mol −1 . The results obtained are in support to the high photostability of the nucleic acid bases which guarantee the normal biological function of nucleic acids.
doi_str_mv 10.55730/1300-0527.3490
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10446915</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2857838236</sourcerecordid><originalsourceid>FETCH-LOGICAL-c325t-20adf29977ca373a46cacbb912768aed7f606cf903d19ec1b48f36f88917f66e3</originalsourceid><addsrcrecordid>eNpVUU1Lw0AUDKJgrZ697tFL291svtaLaPGjUFCkHjwtr5uXJpJk434U6q83_aAoPHjDzLx5hwmCa0bHcZxyOmGc0hGNw3TMI0FPgsGROP2Dz4MLa78oZaKfQeAXJZoGarJGY70lXamdViU2lepJB97pBk31A67SLdEFURunbdUigTYnKw9tj28JkIf55xtRuum823n7a-t8viFQ63ZFXIlk9j4lyps12svgrIDa4tVhD4OPp8fF9GU0f32eTe_nI8XD2I1CCnkRCpGmCnjKIUoUqOVSsDBNMsA8LRKaqEJQnjOBii2jrOBJkWWC9VKCfBjc7XM7v2wwV9g6A7XsTNWA2UgNlfyvtFUpV3otGY2iRLC4T7g5JBj97dE62VRWYV1Di9pbGWZxmvEs5ElvneytymhrDRbHP4zKXUVy24LctiC3FfFfyRqG9Q</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2857838236</pqid></control><display><type>article</type><title>Thermal versus photochemical tautomerization of cytosine and guanine: a BLYP computational study along the IRC curves</title><source>PubMed Central</source><source>EZB Electronic Journals Library</source><creator>CHERNEVA, TSVETINA ; DELCHEV, VASSIL</creator><creatorcontrib>CHERNEVA, TSVETINA ; DELCHEV, VASSIL</creatorcontrib><description>We performed a theoretical study, at the BLYP/aug-cc-pVDZ theoretical level, of the mechanisms of H-transfer between biologically relevant tautomers of cytosine and guanine. The analysis of the ground- and excited state energy barriers of the conversions showed that in some cases they are lower as compared to the ground state reactions. The inclusion of one water molecule as a catalyst in the oxo-amino form of cytosine and guanine drastically changes the mechanism of the reactions in the ground as well as in the excited state. For example, the ground state reaction path of cytosine reduces the energy barrier from 165 to 60 kJ.mol −1 and for guanine, this reduction is from 92 kJ.mol −1 to 24 kJ.mol −1 . The results obtained are in support to the high photostability of the nucleic acid bases which guarantee the normal biological function of nucleic acids.</description><identifier>ISSN: 1300-0527</identifier><identifier>EISSN: 1300-0527</identifier><identifier>EISSN: 1303-6130</identifier><identifier>DOI: 10.55730/1300-0527.3490</identifier><language>eng</language><publisher>Scientific and Technological Research Council of Turkey (TUBITAK)</publisher><ispartof>Turkish journal of chemistry, 2022-01, Vol.46 (6), p.1909-1917</ispartof><rights>TÜBİTAK 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10446915/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10446915/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids></links><search><creatorcontrib>CHERNEVA, TSVETINA</creatorcontrib><creatorcontrib>DELCHEV, VASSIL</creatorcontrib><title>Thermal versus photochemical tautomerization of cytosine and guanine: a BLYP computational study along the IRC curves</title><title>Turkish journal of chemistry</title><description>We performed a theoretical study, at the BLYP/aug-cc-pVDZ theoretical level, of the mechanisms of H-transfer between biologically relevant tautomers of cytosine and guanine. The analysis of the ground- and excited state energy barriers of the conversions showed that in some cases they are lower as compared to the ground state reactions. The inclusion of one water molecule as a catalyst in the oxo-amino form of cytosine and guanine drastically changes the mechanism of the reactions in the ground as well as in the excited state. For example, the ground state reaction path of cytosine reduces the energy barrier from 165 to 60 kJ.mol −1 and for guanine, this reduction is from 92 kJ.mol −1 to 24 kJ.mol −1 . The results obtained are in support to the high photostability of the nucleic acid bases which guarantee the normal biological function of nucleic acids.</description><issn>1300-0527</issn><issn>1300-0527</issn><issn>1303-6130</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNpVUU1Lw0AUDKJgrZ697tFL291svtaLaPGjUFCkHjwtr5uXJpJk434U6q83_aAoPHjDzLx5hwmCa0bHcZxyOmGc0hGNw3TMI0FPgsGROP2Dz4MLa78oZaKfQeAXJZoGarJGY70lXamdViU2lepJB97pBk31A67SLdEFURunbdUigTYnKw9tj28JkIf55xtRuum823n7a-t8viFQ63ZFXIlk9j4lyps12svgrIDa4tVhD4OPp8fF9GU0f32eTe_nI8XD2I1CCnkRCpGmCnjKIUoUqOVSsDBNMsA8LRKaqEJQnjOBii2jrOBJkWWC9VKCfBjc7XM7v2wwV9g6A7XsTNWA2UgNlfyvtFUpV3otGY2iRLC4T7g5JBj97dE62VRWYV1Di9pbGWZxmvEs5ElvneytymhrDRbHP4zKXUVy24LctiC3FfFfyRqG9Q</recordid><startdate>20220101</startdate><enddate>20220101</enddate><creator>CHERNEVA, TSVETINA</creator><creator>DELCHEV, VASSIL</creator><general>Scientific and Technological Research Council of Turkey (TUBITAK)</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20220101</creationdate><title>Thermal versus photochemical tautomerization of cytosine and guanine: a BLYP computational study along the IRC curves</title><author>CHERNEVA, TSVETINA ; DELCHEV, VASSIL</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c325t-20adf29977ca373a46cacbb912768aed7f606cf903d19ec1b48f36f88917f66e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>CHERNEVA, TSVETINA</creatorcontrib><creatorcontrib>DELCHEV, VASSIL</creatorcontrib><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Turkish journal of chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>CHERNEVA, TSVETINA</au><au>DELCHEV, VASSIL</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Thermal versus photochemical tautomerization of cytosine and guanine: a BLYP computational study along the IRC curves</atitle><jtitle>Turkish journal of chemistry</jtitle><date>2022-01-01</date><risdate>2022</risdate><volume>46</volume><issue>6</issue><spage>1909</spage><epage>1917</epage><pages>1909-1917</pages><issn>1300-0527</issn><eissn>1300-0527</eissn><eissn>1303-6130</eissn><abstract>We performed a theoretical study, at the BLYP/aug-cc-pVDZ theoretical level, of the mechanisms of H-transfer between biologically relevant tautomers of cytosine and guanine. The analysis of the ground- and excited state energy barriers of the conversions showed that in some cases they are lower as compared to the ground state reactions. The inclusion of one water molecule as a catalyst in the oxo-amino form of cytosine and guanine drastically changes the mechanism of the reactions in the ground as well as in the excited state. For example, the ground state reaction path of cytosine reduces the energy barrier from 165 to 60 kJ.mol −1 and for guanine, this reduction is from 92 kJ.mol −1 to 24 kJ.mol −1 . The results obtained are in support to the high photostability of the nucleic acid bases which guarantee the normal biological function of nucleic acids.</abstract><pub>Scientific and Technological Research Council of Turkey (TUBITAK)</pub><doi>10.55730/1300-0527.3490</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1300-0527
ispartof Turkish journal of chemistry, 2022-01, Vol.46 (6), p.1909-1917
issn 1300-0527
1300-0527
1303-6130
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10446915
source PubMed Central; EZB Electronic Journals Library
title Thermal versus photochemical tautomerization of cytosine and guanine: a BLYP computational study along the IRC curves
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-06T19%3A50%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Thermal%20versus%20photochemical%20tautomerization%20of%20cytosine%20and%20guanine:%20a%20BLYP%20computational%20study%20along%20the%20IRC%20curves&rft.jtitle=Turkish%20journal%20of%20chemistry&rft.au=CHERNEVA,%20TSVETINA&rft.date=2022-01-01&rft.volume=46&rft.issue=6&rft.spage=1909&rft.epage=1917&rft.pages=1909-1917&rft.issn=1300-0527&rft.eissn=1300-0527&rft_id=info:doi/10.55730/1300-0527.3490&rft_dat=%3Cproquest_pubme%3E2857838236%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c325t-20adf29977ca373a46cacbb912768aed7f606cf903d19ec1b48f36f88917f66e3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2857838236&rft_id=info:pmid/&rfr_iscdi=true