Genetic mapping reveals new loci and alleles for flowering time and plant height using the double round-robin population of barley

• Published in: Journal of experimental botany 2024-04, Vol.75 (8), p.2385-2402
• Main Authors: Cosenza, Francesco, Shrestha, Asis, Van Inghelandt, Delphine, Casale, Federico A, Wu, Po-Ya, Weisweiler, Marius, Li, Jinquan, Wespel, Franziska, Stich, Benjamin
• Format: Article
• Language: English
• Subjects: Alleles; Chromosome Mapping; Genotype; Hordeum - genetics; Phenotype; Quantitative Trait Loci - genetics; Research Papers
• ISSN: 0022-0957; 1460-2431; 1460-2431
• DOI: 10.1093/jxb/erae010

Flowering time and plant height are two critical determinants of yield potential in barley (Hordeum vulgare). Despite their role in plant physiological regulation, a complete overview of the genetic complexity of flowering time and plant height regulation in barley is still lacking. Using a double round-robin population originated from the crossings of 23 diverse parental inbred lines, we aimed to determine the variance components in the regulation of flowering time and plant height in barley as well as to identify new genetic variants by single and multi-population QTL analyses and allele mining. Despite similar genotypic variance, we observed higher environmental variance components for plant height than flowering time. Furthermore, we detected new QTLs for flowering time and plant height. Finally, we identified a new functional allelic variant of the main regulatory gene Ppd-H1. Our results show that the genetic architecture of flowering time and plant height might be more complex than reported earlier and that a number of undetected, small effect, or low-frequency genetic variants underlie the control of these two traits.