An energy-conserving reaction in amino acid metabolism catalyzed by arginine synthetase

• Published in: Proceedings of the National Academy of Sciences - PNAS 2024-04, Vol.121 (16), p.e2401313121
• Main Authors: Michimori, Yuta, Yokooji, Yuusuke, Atomi, Haruyuki
• Format: Article
• Language: English
• Subjects: Adenosine; Adenosine diphosphate; Adenosine Triphosphate - metabolism; Amino acids; Ammonia; Arginine; Arginine - metabolism; Argininosuccinate lyase; ATP; Biological Sciences; Biosynthesis; Carbamate kinase; Catalysis; Citrulline; Citrulline - metabolism; Energy conservation; Enzymes; Eukaryotes; Gene disruption; Kinases; Ligases; Metabolism; Microorganisms; Ornithine - genetics; Ornithine transcarbamoylase; Phosphates; Substrates
• ISSN: 0027-8424; 1091-6490; 1091-6490
• DOI: 10.1073/pnas.2401313121

All forms of life are presumed to synthesize arginine from citrulline via a two-step pathway consisting of argininosuccinate synthetase and argininosuccinate lyase using citrulline, adenosine 5'-triphosphate (ATP), and aspartate as substrates. Conversion of arginine to citrulline predominantly proceeds via hydrolysis. Here, from the hyperthermophilic archaeon , we identified an enzyme which we designate "arginine synthetase". In arginine synthesis, the enzyme converts citrulline, ATP, and free ammonia to arginine, adenosine 5'-diphosphate (ADP), and phosphate. In the reverse direction, arginine synthetase conserves the energy of arginine deimination and generates ATP from ADP and phosphate while releasing ammonia. The equilibrium constant of this reaction at pH 7.0 is [Cit][ATP][NH ]/[Arg][ADP][Pi] = 10.1 ± 0.7 at 80 °C, corresponding to a ΔG°' of -6.8 ± 0.2 kJ mol . Growth of the gene disruption strain was compared to the host strain in medium composed of amino acids. The results suggested that arginine synthetase is necessary in providing ornithine, the precursor for proline biosynthesis, as well as in generating ATP. Growth in medium supplemented with citrulline indicated that arginine synthetase can function in the direction of arginine synthesis. The enzyme is widespread in nature, including bacteria and eukaryotes, and catalyzes a long-overlooked energy-conserving reaction in microbial amino acid metabolism. Along with ornithine transcarbamoylase and carbamate kinase, the pathway identified here is designated the arginine synthetase pathway.