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Desmosomal interactome in keratinocytes: a systems biology approach leading to an understanding of the pathogenesis of skin disease
We provide the first description of the desmosome network in keratinocytes using a systems level approach. The desmo-adhesome consists of 59 proteins connected by 128 direct interactions and forms different functional subnets. Whilst the structure appears to be extremely robust against random pertur...
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Published in: | Cellular and molecular life sciences : CMLS 2009-11, Vol.66 (21), p.3517-3533 |
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description | We provide the first description of the desmosome network in keratinocytes using a systems level approach. The desmo-adhesome consists of 59 proteins connected by 128 direct interactions and forms different functional subnets. Whilst the structure appears to be extremely robust against random perturbations, network fragmentation analysis suggests that the desmo-adhesome is susceptible to targeted attacks. To confirm this prediction, we applied this model to the autoimmune disease Pemphigus Vulgaris (PV), a paradigm of external perturbation of the desmosome. Our analysis showed that the adaptor protein plakophilin (Pkp) 3 was in the highest percentile group for both connectivity rate and gene expression changes in experimental PV. This observation led us to speculate that Pkp3 was crucial in desmosomal remodelling, and therefore we designed the experiments to verify this hypothesis. Our data demonstrate that, whilst Pkp3 is important in conferring adhesive strength to keratinocytes, it also acts as a central molecule mediating cell–cell detachment induced by PV IgG. |
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The desmo-adhesome consists of 59 proteins connected by 128 direct interactions and forms different functional subnets. Whilst the structure appears to be extremely robust against random perturbations, network fragmentation analysis suggests that the desmo-adhesome is susceptible to targeted attacks. To confirm this prediction, we applied this model to the autoimmune disease Pemphigus Vulgaris (PV), a paradigm of external perturbation of the desmosome. Our analysis showed that the adaptor protein plakophilin (Pkp) 3 was in the highest percentile group for both connectivity rate and gene expression changes in experimental PV. This observation led us to speculate that Pkp3 was crucial in desmosomal remodelling, and therefore we designed the experiments to verify this hypothesis. Our data demonstrate that, whilst Pkp3 is important in conferring adhesive strength to keratinocytes, it also acts as a central molecule mediating cell–cell detachment induced by PV IgG.</description><identifier>ISSN: 1420-682X</identifier><identifier>EISSN: 1420-9071</identifier><identifier>DOI: 10.1007/s00018-009-0139-7</identifier><identifier>PMID: 19756386</identifier><language>eng</language><publisher>Basel: SP Birkhäuser Verlag Basel</publisher><subject>Adaptor Proteins, Signal Transducing - metabolism ; Adaptor Proteins, Signal Transducing - physiology ; Biochemistry ; Biomedical and Life Sciences ; Biomedicine ; Cell Adhesion - physiology ; Cell Biology ; Cells, Cultured ; Cellular biology ; Cytoskeletal Proteins - metabolism ; Cytoskeletal Proteins - physiology ; Dermatology ; Desmosomes - chemistry ; Desmosomes - metabolism ; Gene expression ; Humans ; Keratinocytes - metabolism ; Life Sciences ; Membrane Proteins - metabolism ; Metabolic Networks and Pathways - physiology ; Metabolome - physiology ; Models, Biological ; Molecular biology ; Pemphigus ; Protein Binding ; Proteins ; Research Article ; Skin diseases ; Skin Diseases - etiology ; Skin Diseases - metabolism ; Systems Biology - methods</subject><ispartof>Cellular and molecular life sciences : CMLS, 2009-11, Vol.66 (21), p.3517-3533</ispartof><rights>Birkhäuser Verlag, Basel/Switzerland 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c469t-487d7ffd9193b2c1eafe48a2aa1b15994a9790a2fd9e9c1e8999e55cafa0d8d83</citedby><cites>FETCH-LOGICAL-c469t-487d7ffd9193b2c1eafe48a2aa1b15994a9790a2fd9e9c1e8999e55cafa0d8d83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11115514/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11115514/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19756386$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cirillo, Nicola</creatorcontrib><creatorcontrib>Prime, Stephen S.</creatorcontrib><title>Desmosomal interactome in keratinocytes: a systems biology approach leading to an understanding of the pathogenesis of skin disease</title><title>Cellular and molecular life sciences : CMLS</title><addtitle>Cell. Mol. Life Sci</addtitle><addtitle>Cell Mol Life Sci</addtitle><description>We provide the first description of the desmosome network in keratinocytes using a systems level approach. The desmo-adhesome consists of 59 proteins connected by 128 direct interactions and forms different functional subnets. Whilst the structure appears to be extremely robust against random perturbations, network fragmentation analysis suggests that the desmo-adhesome is susceptible to targeted attacks. To confirm this prediction, we applied this model to the autoimmune disease Pemphigus Vulgaris (PV), a paradigm of external perturbation of the desmosome. Our analysis showed that the adaptor protein plakophilin (Pkp) 3 was in the highest percentile group for both connectivity rate and gene expression changes in experimental PV. This observation led us to speculate that Pkp3 was crucial in desmosomal remodelling, and therefore we designed the experiments to verify this hypothesis. Our data demonstrate that, whilst Pkp3 is important in conferring adhesive strength to keratinocytes, it also acts as a central molecule mediating cell–cell detachment induced by PV IgG.</description><subject>Adaptor Proteins, Signal Transducing - metabolism</subject><subject>Adaptor Proteins, Signal Transducing - physiology</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cell Adhesion - physiology</subject><subject>Cell Biology</subject><subject>Cells, Cultured</subject><subject>Cellular biology</subject><subject>Cytoskeletal Proteins - metabolism</subject><subject>Cytoskeletal Proteins - physiology</subject><subject>Dermatology</subject><subject>Desmosomes - chemistry</subject><subject>Desmosomes - metabolism</subject><subject>Gene expression</subject><subject>Humans</subject><subject>Keratinocytes - metabolism</subject><subject>Life Sciences</subject><subject>Membrane Proteins - metabolism</subject><subject>Metabolic Networks and Pathways - physiology</subject><subject>Metabolome - physiology</subject><subject>Models, Biological</subject><subject>Molecular biology</subject><subject>Pemphigus</subject><subject>Protein Binding</subject><subject>Proteins</subject><subject>Research Article</subject><subject>Skin diseases</subject><subject>Skin Diseases - etiology</subject><subject>Skin Diseases - metabolism</subject><subject>Systems Biology - methods</subject><issn>1420-682X</issn><issn>1420-9071</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNp1kU1v1DAQhi0Eou3CD-CCLC6cAnY-bS4IFQqVKvUCEjdrNplk3SZ28DhIe-aP47ArSpHqi8czz7zj0cvYCyneSCGatySEkCoTQmdCFjprHrFTWeYi06KRj49xrfLvJ-yM6CbBlcrrp-xE6qaqC1Wfsl8fkSZPfoKRWxcxQBv9hCnmt-kRrfPtPiK948BpTxEn4lvrRz_sOcxz8NDu-IjQWTfw6Dk4vrgOA0Vwf3K-53GHfIa48wM6JEtrjm7ThM4SAuEz9qSHkfD58d6wbxefvp5_ya6uP1-ef7jK2rLWMStV0zV932mpi23eSoQeSwU5gNzKSusSdKMF5IlAncpKa41V1UIPolOdKjbs_UF3XrYTdi26GGA0c7AThL3xYM39irM7M_ifRqZTVbJMCq-PCsH_WJCimSy1OI7g0C9kmqIUqij0Sr76j7zxS3BpPZPLopJ1IVZIHqA2eKKA_d-_SGFWh83BYZMcNqvDacCGvfx3ibuOo6UJyA8ApZIbMNxNflj1N2FetXw</recordid><startdate>20091101</startdate><enddate>20091101</enddate><creator>Cirillo, Nicola</creator><creator>Prime, Stephen S.</creator><general>SP Birkhäuser Verlag Basel</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SS</scope><scope>7T5</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U7</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20091101</creationdate><title>Desmosomal interactome in keratinocytes: a systems biology approach leading to an understanding of the pathogenesis of skin disease</title><author>Cirillo, Nicola ; Prime, Stephen S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c469t-487d7ffd9193b2c1eafe48a2aa1b15994a9790a2fd9e9c1e8999e55cafa0d8d83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Adaptor Proteins, Signal Transducing - 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metabolism</topic><topic>Systems Biology - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cirillo, Nicola</creatorcontrib><creatorcontrib>Prime, Stephen S.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection (Proquest)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biological Sciences</collection><collection>Agriculture Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>ProQuest research library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Cellular and molecular life sciences : CMLS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cirillo, Nicola</au><au>Prime, Stephen S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Desmosomal interactome in keratinocytes: a systems biology approach leading to an understanding of the pathogenesis of skin disease</atitle><jtitle>Cellular and molecular life sciences : CMLS</jtitle><stitle>Cell. Mol. Life Sci</stitle><addtitle>Cell Mol Life Sci</addtitle><date>2009-11-01</date><risdate>2009</risdate><volume>66</volume><issue>21</issue><spage>3517</spage><epage>3533</epage><pages>3517-3533</pages><issn>1420-682X</issn><eissn>1420-9071</eissn><abstract>We provide the first description of the desmosome network in keratinocytes using a systems level approach. The desmo-adhesome consists of 59 proteins connected by 128 direct interactions and forms different functional subnets. Whilst the structure appears to be extremely robust against random perturbations, network fragmentation analysis suggests that the desmo-adhesome is susceptible to targeted attacks. To confirm this prediction, we applied this model to the autoimmune disease Pemphigus Vulgaris (PV), a paradigm of external perturbation of the desmosome. Our analysis showed that the adaptor protein plakophilin (Pkp) 3 was in the highest percentile group for both connectivity rate and gene expression changes in experimental PV. This observation led us to speculate that Pkp3 was crucial in desmosomal remodelling, and therefore we designed the experiments to verify this hypothesis. Our data demonstrate that, whilst Pkp3 is important in conferring adhesive strength to keratinocytes, it also acts as a central molecule mediating cell–cell detachment induced by PV IgG.</abstract><cop>Basel</cop><pub>SP Birkhäuser Verlag Basel</pub><pmid>19756386</pmid><doi>10.1007/s00018-009-0139-7</doi><tpages>17</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adaptor Proteins, Signal Transducing - metabolism Adaptor Proteins, Signal Transducing - physiology Biochemistry Biomedical and Life Sciences Biomedicine Cell Adhesion - physiology Cell Biology Cells, Cultured Cellular biology Cytoskeletal Proteins - metabolism Cytoskeletal Proteins - physiology Dermatology Desmosomes - chemistry Desmosomes - metabolism Gene expression Humans Keratinocytes - metabolism Life Sciences Membrane Proteins - metabolism Metabolic Networks and Pathways - physiology Metabolome - physiology Models, Biological Molecular biology Pemphigus Protein Binding Proteins Research Article Skin diseases Skin Diseases - etiology Skin Diseases - metabolism Systems Biology - methods |
title | Desmosomal interactome in keratinocytes: a systems biology approach leading to an understanding of the pathogenesis of skin disease |
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