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Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress
Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabo...
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Published in: | Genes 2024-05, Vol.15 (6), p.696 |
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description | Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice (
)
gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice
and identified 16
sequences. Phylogenetic analysis categorized the
predominantly within the three subfamilies. The expression levels of
in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many
under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of
, enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation. |
doi_str_mv | 10.3390/genes15060696 |
format | article |
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)
gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice
and identified 16
sequences. Phylogenetic analysis categorized the
predominantly within the three subfamilies. The expression levels of
in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many
under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of
, enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes15060696</identifier><identifier>PMID: 38927632</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic stress ; Analysis ; Antioxidants ; Cation Transport Proteins - genetics ; Cation Transport Proteins - metabolism ; Chemical elements ; Chlorophyll ; Enzymes ; Flowers & plants ; Food security ; Gene expression ; Gene Expression Regulation, Plant ; Genetic engineering ; Genome, Plant ; Genomes ; Genomic analysis ; Genomics ; Heavy metals ; Localization ; Manganese ; Manganese - metabolism ; Manganese - toxicity ; Oryza - genetics ; Oryza - growth & development ; Oryza - metabolism ; Photosynthesis ; Phylogeny ; Physiological aspects ; Plant growth ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Roots - drug effects ; Plant Roots - genetics ; Plant Roots - growth & development ; Plant Roots - metabolism ; Poisoning ; Protein transport ; Proteins ; Rice ; Selenium ; Selenium - metabolism ; Selenium - toxicity ; Stress, Physiological - genetics ; Toxicity ; Zinc</subject><ispartof>Genes, 2024-05, Vol.15 (6), p.696</ispartof><rights>COPYRIGHT 2024 MDPI AG</rights><rights>2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2024 by the authors. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c369t-b0e7686c7b14718cfd6fffd335ccd6568b73a70bcde9fd4579adce102dddb4b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/3072327833/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/3072327833?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38927632$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zeng, Xiang</creatorcontrib><creatorcontrib>Yang, Shaoxia</creatorcontrib><creatorcontrib>Li, Feng</creatorcontrib><creatorcontrib>Yao, Yushuang</creatorcontrib><creatorcontrib>Wu, Zhengwei</creatorcontrib><creatorcontrib>Xue, Yingbin</creatorcontrib><creatorcontrib>Liu, Ying</creatorcontrib><title>Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice (
)
gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice
and identified 16
sequences. Phylogenetic analysis categorized the
predominantly within the three subfamilies. The expression levels of
in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many
under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of
, enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.</description><subject>Abiotic stress</subject><subject>Analysis</subject><subject>Antioxidants</subject><subject>Cation Transport Proteins - genetics</subject><subject>Cation Transport Proteins - metabolism</subject><subject>Chemical elements</subject><subject>Chlorophyll</subject><subject>Enzymes</subject><subject>Flowers & plants</subject><subject>Food security</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genetic engineering</subject><subject>Genome, Plant</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>Genomics</subject><subject>Heavy metals</subject><subject>Localization</subject><subject>Manganese</subject><subject>Manganese - metabolism</subject><subject>Manganese - toxicity</subject><subject>Oryza - genetics</subject><subject>Oryza - growth & development</subject><subject>Oryza - metabolism</subject><subject>Photosynthesis</subject><subject>Phylogeny</subject><subject>Physiological aspects</subject><subject>Plant growth</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Roots - drug effects</subject><subject>Plant Roots - genetics</subject><subject>Plant Roots - growth & development</subject><subject>Plant Roots - metabolism</subject><subject>Poisoning</subject><subject>Protein transport</subject><subject>Proteins</subject><subject>Rice</subject><subject>Selenium</subject><subject>Selenium - metabolism</subject><subject>Selenium - toxicity</subject><subject>Stress, Physiological - genetics</subject><subject>Toxicity</subject><subject>Zinc</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNptks9LHTEQx0NpqWI99loCvfSyNj92k82pPMTqA4tFhUIvIZtMXiO7yetmt-h_b57PWl8xOWTIfOY7mckg9J6SI84V-byCCJk2RBChxCu0z4jkVV2z5vUzew8d5nxDyqoJI6R5i_Z4q5gUnO2j4RRiGqD6ERzgpYM4BR-smUKKOHl8kX8uv2ccIr4MFrCJDpcAwCe36xFy3lCLaPq7HDKeo4MRfzNxZcqrtvAV9BDDPOCracO_Q2-86TMcPp4H6PrryfXxWXV-cbo8XpxXlgs1VR0BKVphZUdrSVvrnfDeO84ba51oRNtJbiTprAPlXd1IZZwFSphzrqs7foC-bGXXczdAccVpNL1ej2Ew451OJuhdTwy_9Cr90ZQywholi8KnR4Ux_Z4hT3oI2ULfl9LSnDUnkrWEKsIK-vE_9CbNY2nKluJMtpz_o1amBx2iTyWx3YjqhVSqfAh_SHv0AlW2gyHYFMGHcr8TUG0D7JhyHsE_FUmJ3oyI3hmRwn943pkn-u9A8HtaTrfj</recordid><startdate>20240527</startdate><enddate>20240527</enddate><creator>Zeng, Xiang</creator><creator>Yang, Shaoxia</creator><creator>Li, Feng</creator><creator>Yao, Yushuang</creator><creator>Wu, Zhengwei</creator><creator>Xue, Yingbin</creator><creator>Liu, Ying</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20240527</creationdate><title>Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress</title><author>Zeng, Xiang ; Yang, Shaoxia ; Li, Feng ; Yao, Yushuang ; Wu, Zhengwei ; Xue, Yingbin ; Liu, Ying</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c369t-b0e7686c7b14718cfd6fffd335ccd6568b73a70bcde9fd4579adce102dddb4b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Abiotic stress</topic><topic>Analysis</topic><topic>Antioxidants</topic><topic>Cation Transport Proteins - genetics</topic><topic>Cation Transport Proteins - metabolism</topic><topic>Chemical elements</topic><topic>Chlorophyll</topic><topic>Enzymes</topic><topic>Flowers & plants</topic><topic>Food security</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genetic engineering</topic><topic>Genome, Plant</topic><topic>Genomes</topic><topic>Genomic analysis</topic><topic>Genomics</topic><topic>Heavy metals</topic><topic>Localization</topic><topic>Manganese</topic><topic>Manganese - metabolism</topic><topic>Manganese - toxicity</topic><topic>Oryza - genetics</topic><topic>Oryza - growth & development</topic><topic>Oryza - metabolism</topic><topic>Photosynthesis</topic><topic>Phylogeny</topic><topic>Physiological aspects</topic><topic>Plant growth</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Roots - drug effects</topic><topic>Plant Roots - genetics</topic><topic>Plant Roots - growth & development</topic><topic>Plant Roots - metabolism</topic><topic>Poisoning</topic><topic>Protein transport</topic><topic>Proteins</topic><topic>Rice</topic><topic>Selenium</topic><topic>Selenium - metabolism</topic><topic>Selenium - toxicity</topic><topic>Stress, Physiological - genetics</topic><topic>Toxicity</topic><topic>Zinc</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zeng, Xiang</creatorcontrib><creatorcontrib>Yang, Shaoxia</creatorcontrib><creatorcontrib>Li, Feng</creatorcontrib><creatorcontrib>Yao, Yushuang</creatorcontrib><creatorcontrib>Wu, Zhengwei</creatorcontrib><creatorcontrib>Xue, Yingbin</creatorcontrib><creatorcontrib>Liu, Ying</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content (ProQuest)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zeng, Xiang</au><au>Yang, Shaoxia</au><au>Li, Feng</au><au>Yao, Yushuang</au><au>Wu, Zhengwei</au><au>Xue, Yingbin</au><au>Liu, Ying</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2024-05-27</date><risdate>2024</risdate><volume>15</volume><issue>6</issue><spage>696</spage><pages>696-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice (
)
gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice
and identified 16
sequences. Phylogenetic analysis categorized the
predominantly within the three subfamilies. The expression levels of
in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many
under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of
, enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>38927632</pmid><doi>10.3390/genes15060696</doi><oa>free_for_read</oa></addata></record> |
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subjects | Abiotic stress Analysis Antioxidants Cation Transport Proteins - genetics Cation Transport Proteins - metabolism Chemical elements Chlorophyll Enzymes Flowers & plants Food security Gene expression Gene Expression Regulation, Plant Genetic engineering Genome, Plant Genomes Genomic analysis Genomics Heavy metals Localization Manganese Manganese - metabolism Manganese - toxicity Oryza - genetics Oryza - growth & development Oryza - metabolism Photosynthesis Phylogeny Physiological aspects Plant growth Plant Proteins - genetics Plant Proteins - metabolism Plant Roots - drug effects Plant Roots - genetics Plant Roots - growth & development Plant Roots - metabolism Poisoning Protein transport Proteins Rice Selenium Selenium - metabolism Selenium - toxicity Stress, Physiological - genetics Toxicity Zinc |
title | Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress |
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