Loading…

Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress

Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabo...

Full description

Saved in:
Bibliographic Details
Published in:Genes 2024-05, Vol.15 (6), p.696
Main Authors: Zeng, Xiang, Yang, Shaoxia, Li, Feng, Yao, Yushuang, Wu, Zhengwei, Xue, Yingbin, Liu, Ying
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites cdi_FETCH-LOGICAL-c369t-b0e7686c7b14718cfd6fffd335ccd6568b73a70bcde9fd4579adce102dddb4b3
container_end_page
container_issue 6
container_start_page 696
container_title Genes
container_volume 15
creator Zeng, Xiang
Yang, Shaoxia
Li, Feng
Yao, Yushuang
Wu, Zhengwei
Xue, Yingbin
Liu, Ying
description Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice ( ) gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice and identified 16 sequences. Phylogenetic analysis categorized the predominantly within the three subfamilies. The expression levels of in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of , enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.
doi_str_mv 10.3390/genes15060696
format article
fullrecord <record><control><sourceid>gale_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11202597</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A799389397</galeid><sourcerecordid>A799389397</sourcerecordid><originalsourceid>FETCH-LOGICAL-c369t-b0e7686c7b14718cfd6fffd335ccd6568b73a70bcde9fd4579adce102dddb4b3</originalsourceid><addsrcrecordid>eNptks9LHTEQx0NpqWI99loCvfSyNj92k82pPMTqA4tFhUIvIZtMXiO7yetmt-h_b57PWl8xOWTIfOY7mckg9J6SI84V-byCCJk2RBChxCu0z4jkVV2z5vUzew8d5nxDyqoJI6R5i_Z4q5gUnO2j4RRiGqD6ERzgpYM4BR-smUKKOHl8kX8uv2ccIr4MFrCJDpcAwCe36xFy3lCLaPq7HDKeo4MRfzNxZcqrtvAV9BDDPOCracO_Q2-86TMcPp4H6PrryfXxWXV-cbo8XpxXlgs1VR0BKVphZUdrSVvrnfDeO84ba51oRNtJbiTprAPlXd1IZZwFSphzrqs7foC-bGXXczdAccVpNL1ej2Ew451OJuhdTwy_9Cr90ZQywholi8KnR4Ux_Z4hT3oI2ULfl9LSnDUnkrWEKsIK-vE_9CbNY2nKluJMtpz_o1amBx2iTyWx3YjqhVSqfAh_SHv0AlW2gyHYFMGHcr8TUG0D7JhyHsE_FUmJ3oyI3hmRwn943pkn-u9A8HtaTrfj</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3072327833</pqid></control><display><type>article</type><title>Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress</title><source>Publicly Available Content (ProQuest)</source><source>PubMed Central</source><creator>Zeng, Xiang ; Yang, Shaoxia ; Li, Feng ; Yao, Yushuang ; Wu, Zhengwei ; Xue, Yingbin ; Liu, Ying</creator><creatorcontrib>Zeng, Xiang ; Yang, Shaoxia ; Li, Feng ; Yao, Yushuang ; Wu, Zhengwei ; Xue, Yingbin ; Liu, Ying</creatorcontrib><description>Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice ( ) gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice and identified 16 sequences. Phylogenetic analysis categorized the predominantly within the three subfamilies. The expression levels of in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of , enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes15060696</identifier><identifier>PMID: 38927632</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic stress ; Analysis ; Antioxidants ; Cation Transport Proteins - genetics ; Cation Transport Proteins - metabolism ; Chemical elements ; Chlorophyll ; Enzymes ; Flowers &amp; plants ; Food security ; Gene expression ; Gene Expression Regulation, Plant ; Genetic engineering ; Genome, Plant ; Genomes ; Genomic analysis ; Genomics ; Heavy metals ; Localization ; Manganese ; Manganese - metabolism ; Manganese - toxicity ; Oryza - genetics ; Oryza - growth &amp; development ; Oryza - metabolism ; Photosynthesis ; Phylogeny ; Physiological aspects ; Plant growth ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Roots - drug effects ; Plant Roots - genetics ; Plant Roots - growth &amp; development ; Plant Roots - metabolism ; Poisoning ; Protein transport ; Proteins ; Rice ; Selenium ; Selenium - metabolism ; Selenium - toxicity ; Stress, Physiological - genetics ; Toxicity ; Zinc</subject><ispartof>Genes, 2024-05, Vol.15 (6), p.696</ispartof><rights>COPYRIGHT 2024 MDPI AG</rights><rights>2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2024 by the authors. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c369t-b0e7686c7b14718cfd6fffd335ccd6568b73a70bcde9fd4579adce102dddb4b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/3072327833/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/3072327833?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38927632$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zeng, Xiang</creatorcontrib><creatorcontrib>Yang, Shaoxia</creatorcontrib><creatorcontrib>Li, Feng</creatorcontrib><creatorcontrib>Yao, Yushuang</creatorcontrib><creatorcontrib>Wu, Zhengwei</creatorcontrib><creatorcontrib>Xue, Yingbin</creatorcontrib><creatorcontrib>Liu, Ying</creatorcontrib><title>Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice ( ) gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice and identified 16 sequences. Phylogenetic analysis categorized the predominantly within the three subfamilies. The expression levels of in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of , enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.</description><subject>Abiotic stress</subject><subject>Analysis</subject><subject>Antioxidants</subject><subject>Cation Transport Proteins - genetics</subject><subject>Cation Transport Proteins - metabolism</subject><subject>Chemical elements</subject><subject>Chlorophyll</subject><subject>Enzymes</subject><subject>Flowers &amp; plants</subject><subject>Food security</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genetic engineering</subject><subject>Genome, Plant</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>Genomics</subject><subject>Heavy metals</subject><subject>Localization</subject><subject>Manganese</subject><subject>Manganese - metabolism</subject><subject>Manganese - toxicity</subject><subject>Oryza - genetics</subject><subject>Oryza - growth &amp; development</subject><subject>Oryza - metabolism</subject><subject>Photosynthesis</subject><subject>Phylogeny</subject><subject>Physiological aspects</subject><subject>Plant growth</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Roots - drug effects</subject><subject>Plant Roots - genetics</subject><subject>Plant Roots - growth &amp; development</subject><subject>Plant Roots - metabolism</subject><subject>Poisoning</subject><subject>Protein transport</subject><subject>Proteins</subject><subject>Rice</subject><subject>Selenium</subject><subject>Selenium - metabolism</subject><subject>Selenium - toxicity</subject><subject>Stress, Physiological - genetics</subject><subject>Toxicity</subject><subject>Zinc</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNptks9LHTEQx0NpqWI99loCvfSyNj92k82pPMTqA4tFhUIvIZtMXiO7yetmt-h_b57PWl8xOWTIfOY7mckg9J6SI84V-byCCJk2RBChxCu0z4jkVV2z5vUzew8d5nxDyqoJI6R5i_Z4q5gUnO2j4RRiGqD6ERzgpYM4BR-smUKKOHl8kX8uv2ccIr4MFrCJDpcAwCe36xFy3lCLaPq7HDKeo4MRfzNxZcqrtvAV9BDDPOCracO_Q2-86TMcPp4H6PrryfXxWXV-cbo8XpxXlgs1VR0BKVphZUdrSVvrnfDeO84ba51oRNtJbiTprAPlXd1IZZwFSphzrqs7foC-bGXXczdAccVpNL1ej2Ew451OJuhdTwy_9Cr90ZQywholi8KnR4Ux_Z4hT3oI2ULfl9LSnDUnkrWEKsIK-vE_9CbNY2nKluJMtpz_o1amBx2iTyWx3YjqhVSqfAh_SHv0AlW2gyHYFMGHcr8TUG0D7JhyHsE_FUmJ3oyI3hmRwn943pkn-u9A8HtaTrfj</recordid><startdate>20240527</startdate><enddate>20240527</enddate><creator>Zeng, Xiang</creator><creator>Yang, Shaoxia</creator><creator>Li, Feng</creator><creator>Yao, Yushuang</creator><creator>Wu, Zhengwei</creator><creator>Xue, Yingbin</creator><creator>Liu, Ying</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20240527</creationdate><title>Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress</title><author>Zeng, Xiang ; Yang, Shaoxia ; Li, Feng ; Yao, Yushuang ; Wu, Zhengwei ; Xue, Yingbin ; Liu, Ying</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c369t-b0e7686c7b14718cfd6fffd335ccd6568b73a70bcde9fd4579adce102dddb4b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Abiotic stress</topic><topic>Analysis</topic><topic>Antioxidants</topic><topic>Cation Transport Proteins - genetics</topic><topic>Cation Transport Proteins - metabolism</topic><topic>Chemical elements</topic><topic>Chlorophyll</topic><topic>Enzymes</topic><topic>Flowers &amp; plants</topic><topic>Food security</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genetic engineering</topic><topic>Genome, Plant</topic><topic>Genomes</topic><topic>Genomic analysis</topic><topic>Genomics</topic><topic>Heavy metals</topic><topic>Localization</topic><topic>Manganese</topic><topic>Manganese - metabolism</topic><topic>Manganese - toxicity</topic><topic>Oryza - genetics</topic><topic>Oryza - growth &amp; development</topic><topic>Oryza - metabolism</topic><topic>Photosynthesis</topic><topic>Phylogeny</topic><topic>Physiological aspects</topic><topic>Plant growth</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Roots - drug effects</topic><topic>Plant Roots - genetics</topic><topic>Plant Roots - growth &amp; development</topic><topic>Plant Roots - metabolism</topic><topic>Poisoning</topic><topic>Protein transport</topic><topic>Proteins</topic><topic>Rice</topic><topic>Selenium</topic><topic>Selenium - metabolism</topic><topic>Selenium - toxicity</topic><topic>Stress, Physiological - genetics</topic><topic>Toxicity</topic><topic>Zinc</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zeng, Xiang</creatorcontrib><creatorcontrib>Yang, Shaoxia</creatorcontrib><creatorcontrib>Li, Feng</creatorcontrib><creatorcontrib>Yao, Yushuang</creatorcontrib><creatorcontrib>Wu, Zhengwei</creatorcontrib><creatorcontrib>Xue, Yingbin</creatorcontrib><creatorcontrib>Liu, Ying</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content (ProQuest)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zeng, Xiang</au><au>Yang, Shaoxia</au><au>Li, Feng</au><au>Yao, Yushuang</au><au>Wu, Zhengwei</au><au>Xue, Yingbin</au><au>Liu, Ying</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2024-05-27</date><risdate>2024</risdate><volume>15</volume><issue>6</issue><spage>696</spage><pages>696-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice ( ) gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice and identified 16 sequences. Phylogenetic analysis categorized the predominantly within the three subfamilies. The expression levels of in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT-PCR). The findings revealed significant differential expression of many under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of , enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>38927632</pmid><doi>10.3390/genes15060696</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2073-4425
ispartof Genes, 2024-05, Vol.15 (6), p.696
issn 2073-4425
2073-4425
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11202597
source Publicly Available Content (ProQuest); PubMed Central
subjects Abiotic stress
Analysis
Antioxidants
Cation Transport Proteins - genetics
Cation Transport Proteins - metabolism
Chemical elements
Chlorophyll
Enzymes
Flowers & plants
Food security
Gene expression
Gene Expression Regulation, Plant
Genetic engineering
Genome, Plant
Genomes
Genomic analysis
Genomics
Heavy metals
Localization
Manganese
Manganese - metabolism
Manganese - toxicity
Oryza - genetics
Oryza - growth & development
Oryza - metabolism
Photosynthesis
Phylogeny
Physiological aspects
Plant growth
Plant Proteins - genetics
Plant Proteins - metabolism
Plant Roots - drug effects
Plant Roots - genetics
Plant Roots - growth & development
Plant Roots - metabolism
Poisoning
Protein transport
Proteins
Rice
Selenium
Selenium - metabolism
Selenium - toxicity
Stress, Physiological - genetics
Toxicity
Zinc
title Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-07T05%3A13%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome-Wide%20Identification%20of%20OsZIPs%20in%20Rice%20and%20Gene%20Expression%20Analysis%20under%20Manganese%20and%20Selenium%20Stress&rft.jtitle=Genes&rft.au=Zeng,%20Xiang&rft.date=2024-05-27&rft.volume=15&rft.issue=6&rft.spage=696&rft.pages=696-&rft.issn=2073-4425&rft.eissn=2073-4425&rft_id=info:doi/10.3390/genes15060696&rft_dat=%3Cgale_pubme%3EA799389397%3C/gale_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c369t-b0e7686c7b14718cfd6fffd335ccd6568b73a70bcde9fd4579adce102dddb4b3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=3072327833&rft_id=info:pmid/38927632&rft_galeid=A799389397&rfr_iscdi=true