Priority effects alter microbiome composition and increase abundance of probiotic taxa in treefrog tadpoles

• Published in: Applied and environmental microbiology 2024-06, Vol.90 (6), p.e0061924
• Main Authors: Jones, Korin Rex, Belden, Lisa K, Hughey, Myra C
• Format: Article
• Language: English
• Subjects: Abundance; Animals; Anura - microbiology; Bacteria; Bacteria - classification; Bacteria - genetics; Bacteria - isolation & purification; Colonization; Community composition; Composition; Ecology; Embryo, Nonmammalian - microbiology; Embryos; Environmental impact; Gene sequencing; Inoculation; Juveniles; Larva - growth & development; Larva - microbiology; Microbial activity; Microbial Ecology; Microbiomes; Microbiota; Microorganisms; Oxalobacteraceae - physiology; Probiotics; Probiotics - administration & dosage; Probiotics - pharmacology; Pseudomonas; Pseudomonas - physiology; Relative abundance; RNA, Ribosomal, 16S - genetics; rRNA 16S; Stochasticity; Taxa
• ISSN: 0099-2240; 1098-5336; 1098-5336
• DOI: 10.1128/aem.00619-24

Host-associated microbial communities, like other ecological communities, may be impacted by the colonization order of taxa through priority effects. Developing embryos and their associated microbiomes are subject to stochasticity during colonization by bacteria. For amphibian embryos, often developing externally in bacteria-rich environments, this stochasticity may be particularly impactful. For example, the amphibian microbiome can mitigate lethal outcomes from disease for their hosts; however, this may depend on microbiome composition. Here, we examined the assembly of the bacterial community in spring peeper ( ) embryos and tadpoles. First, we reared embryos from identified mating pairs in either lab or field environments to examine the relative impact of environment and parentage on embryo and tadpole bacterial communities. Second, we experimentally inoculated embryos to determine if priority effects (i) could be used to increase the relative abundance of , an amphibian-associated bacteria capable of preventing fungal infection, and (ii) would lead to observed differences in the relative abundances of two closely related bacteria from the genus . Using 16S rRNA gene amplicon sequencing, we observed differences in community composition based on rearing location and parentage in embryos and tadpoles. In the inoculation experiment, we found that priority inoculation could increase the relative abundance of , but did not find that either isolate was able to prevent colonization by the other when given priority. These results highlight the importance of environmental source pools and parentage in determining microbiome composition, while also providing novel methods for the administration of a known amphibian probiotic. Harnessing the functions of host-associated bacteria is a promising mechanism for managing disease outcomes across different host species. In the case of amphibians, certain frog-associated bacteria can mitigate lethal outcomes of infection by the fungal pathogen . Successful probiotic applications require knowledge of community assembly and an understanding of the ecological mechanisms that structure these symbiotic bacterial communities. In our study, we show the importance of environment and parentage in determining bacterial community composition and that community composition can be influenced by priority effects. Further, we provide support for the use of bacterial priority effects as a mechanism to increase the relative abundance of