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LAMP-enabled diagnosis of Kaposi's sarcoma for sub-Saharan Africa
Kaposi's sarcoma (KS) is an endothelial cancer caused by the Kaposi's sarcoma-associated herpesvirus (KSHV) and is one of the most common cancers in sub-Saharan Africa. In limited-resource settings, traditional pathology infrastructure is often insufficient for timely diagnosis, leading to...
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Published in: | Science advances 2023-01, Vol.9 (2), p.eadc8913 |
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creator | McCloskey, Duncan Semeere, Aggrey Ayanga, Racheal Laker-Oketta, Miriam Lukande, Robert Semakadde, Matthew Kanyesigye, Micheal Wenger, Megan LeBoit, Philip McCalmont, Timothy Maurer, Toby Gardner, Andrea Boza, Juan Cesarman, Ethel Martin, Jeffrey Erickson, David |
description | Kaposi's sarcoma (KS) is an endothelial cancer caused by the Kaposi's sarcoma-associated herpesvirus (KSHV) and is one of the most common cancers in sub-Saharan Africa. In limited-resource settings, traditional pathology infrastructure is often insufficient for timely diagnosis, leading to frequent diagnoses at advanced-stage disease where survival is poor. In this study, we investigate molecular diagnosis of KS performed in a point-of-care device to circumvent the limited infrastructure for traditional diagnosis. Using 506 mucocutaneous biopsies collected from patients at three HIV clinics in Uganda, we achieved 97% sensitivity, 92% specificity, and 96% accuracy compared to gold standard U.S.-based pathology. The results presented in this manuscript show that LAMP-based quantification of KSHV DNA extracted from KS-suspected biopsies has the potential to serve as a successful diagnostic for the disease and that diagnosis may be accurately achieved using a point-of-care device, reducing the barriers to obtaining KS diagnosis while increasing diagnostic accuracy. |
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In limited-resource settings, traditional pathology infrastructure is often insufficient for timely diagnosis, leading to frequent diagnoses at advanced-stage disease where survival is poor. In this study, we investigate molecular diagnosis of KS performed in a point-of-care device to circumvent the limited infrastructure for traditional diagnosis. Using 506 mucocutaneous biopsies collected from patients at three HIV clinics in Uganda, we achieved 97% sensitivity, 92% specificity, and 96% accuracy compared to gold standard U.S.-based pathology. The results presented in this manuscript show that LAMP-based quantification of KSHV DNA extracted from KS-suspected biopsies has the potential to serve as a successful diagnostic for the disease and that diagnosis may be accurately achieved using a point-of-care device, reducing the barriers to obtaining KS diagnosis while increasing diagnostic accuracy.</description><identifier>ISSN: 2375-2548</identifier><identifier>EISSN: 2375-2548</identifier><identifier>DOI: 10.1126/sciadv.adc8913</identifier><identifier>PMID: 36638178</identifier><language>eng</language><publisher>United States: American Association for the Advancement of Science</publisher><subject>Biomedicine and Life Sciences ; Cancer ; Health and Medicine ; SciAdv r-articles</subject><ispartof>Science advances, 2023-01, Vol.9 (2), p.eadc8913</ispartof><rights>Copyright © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). 2023 The Authors</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c391t-49e605a6d2b1a0bb65d3469acd0f5f94db0d4d21db1c9f77a0ff023693c404173</citedby><cites>FETCH-LOGICAL-c391t-49e605a6d2b1a0bb65d3469acd0f5f94db0d4d21db1c9f77a0ff023693c404173</cites><orcidid>0000-0002-1624-9711 ; 0000-0003-1936-7681 ; 0000-0001-7738-0142 ; 0000-0001-9449-6649 ; 0000-0002-9773-3256 ; 0000-0001-5572-1647</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11318663/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11318663/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,2884,2885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36638178$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>McCloskey, Duncan</creatorcontrib><creatorcontrib>Semeere, Aggrey</creatorcontrib><creatorcontrib>Ayanga, Racheal</creatorcontrib><creatorcontrib>Laker-Oketta, Miriam</creatorcontrib><creatorcontrib>Lukande, Robert</creatorcontrib><creatorcontrib>Semakadde, Matthew</creatorcontrib><creatorcontrib>Kanyesigye, Micheal</creatorcontrib><creatorcontrib>Wenger, Megan</creatorcontrib><creatorcontrib>LeBoit, Philip</creatorcontrib><creatorcontrib>McCalmont, Timothy</creatorcontrib><creatorcontrib>Maurer, Toby</creatorcontrib><creatorcontrib>Gardner, Andrea</creatorcontrib><creatorcontrib>Boza, Juan</creatorcontrib><creatorcontrib>Cesarman, Ethel</creatorcontrib><creatorcontrib>Martin, Jeffrey</creatorcontrib><creatorcontrib>Erickson, David</creatorcontrib><title>LAMP-enabled diagnosis of Kaposi's sarcoma for sub-Saharan Africa</title><title>Science advances</title><addtitle>Sci Adv</addtitle><description>Kaposi's sarcoma (KS) is an endothelial cancer caused by the Kaposi's sarcoma-associated herpesvirus (KSHV) and is one of the most common cancers in sub-Saharan Africa. 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The results presented in this manuscript show that LAMP-based quantification of KSHV DNA extracted from KS-suspected biopsies has the potential to serve as a successful diagnostic for the disease and that diagnosis may be accurately achieved using a point-of-care device, reducing the barriers to obtaining KS diagnosis while increasing diagnostic accuracy.</description><subject>Biomedicine and Life Sciences</subject><subject>Cancer</subject><subject>Health and Medicine</subject><subject>SciAdv r-articles</subject><issn>2375-2548</issn><issn>2375-2548</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNpVkM1LAzEQxYMottRePcre9LI12WSTzUmW4hdWFNRzmM1Hu7Ld1KRb8L93pbXU0zyYN29mfgidEzwhJOPXUddgNhMwupCEHqFhRkWeZjkrjg_0AI1j_MQYE8Z5TuQpGlDOaUFEMUTlrHx-TW0LVWNNYmqYtz7WMfEueYJVLy9jEiFov4TE-ZDErkrfYAEB2qR0odZwhk4cNNGOd3WEPu5u36cP6ezl_nFazlJNJVmnTFqOc-AmqwjgquK5oYxL0Aa73ElmKmyYyYipiJZOCMDO4YxySTXDjAg6Qjfb3FVXLa3Rtl0HaNQq1EsI38pDrf532nqh5n6jCKGk6B_uE652CcF_dTau1bKO2jYNtNZ3UWWC50JIVrDeOtladfAxBuv2ewhWv-zVlr3ase8HLg6v29v_SNMfv5SBhg</recordid><startdate>20230113</startdate><enddate>20230113</enddate><creator>McCloskey, Duncan</creator><creator>Semeere, Aggrey</creator><creator>Ayanga, Racheal</creator><creator>Laker-Oketta, Miriam</creator><creator>Lukande, Robert</creator><creator>Semakadde, Matthew</creator><creator>Kanyesigye, Micheal</creator><creator>Wenger, Megan</creator><creator>LeBoit, Philip</creator><creator>McCalmont, Timothy</creator><creator>Maurer, Toby</creator><creator>Gardner, Andrea</creator><creator>Boza, Juan</creator><creator>Cesarman, Ethel</creator><creator>Martin, Jeffrey</creator><creator>Erickson, David</creator><general>American Association for the Advancement of Science</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-1624-9711</orcidid><orcidid>https://orcid.org/0000-0003-1936-7681</orcidid><orcidid>https://orcid.org/0000-0001-7738-0142</orcidid><orcidid>https://orcid.org/0000-0001-9449-6649</orcidid><orcidid>https://orcid.org/0000-0002-9773-3256</orcidid><orcidid>https://orcid.org/0000-0001-5572-1647</orcidid></search><sort><creationdate>20230113</creationdate><title>LAMP-enabled diagnosis of Kaposi's sarcoma for sub-Saharan Africa</title><author>McCloskey, Duncan ; 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title | LAMP-enabled diagnosis of Kaposi's sarcoma for sub-Saharan Africa |
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