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Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera)
Abstract Insects have evolved complex and diverse visual systems in which light-sensing protein molecules called “opsins” couple with a chromophore to form photopigments. Insect photopigments group into three major gene families based on wavelength sensitivity: long wavelength (LW), short wavelength...
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Published in: | Genome biology and evolution 2024-09, Vol.16 (9) |
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creator | Powell, Ashlyn Heckenhauer, Jacqueline Pauls, Steffen U Ríos-Touma, Blanca Kuranishi, Ryoichi B Holzenthal, Ralph W Razuri-Gonzales, Ernesto Bybee, Seth Frandsen, Paul B |
description | Abstract
Insects have evolved complex and diverse visual systems in which light-sensing protein molecules called “opsins” couple with a chromophore to form photopigments. Insect photopigments group into three major gene families based on wavelength sensitivity: long wavelength (LW), short wavelength (SW), and ultraviolet wavelength (UV). In this study, we identified 123 opsin sequences from whole-genome assemblies across 25 caddisfly species (Insecta: Trichoptera). We discovered the LW opsins have the most diversity across species and form two separate clades in the opsin gene tree. Conversely, we observed a loss of the SW opsin in half of the trichopteran species in this study, which might be associated with the fact that caddisflies are active during low-light conditions. Lastly, we found a single copy of the UV opsin in all the species in this study, with one exception: Athripsodes cinereus has two copies of the UV opsin and resides within a clade of caddisflies with colorful wing patterns. |
doi_str_mv | 10.1093/gbe/evae185 |
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Insects have evolved complex and diverse visual systems in which light-sensing protein molecules called “opsins” couple with a chromophore to form photopigments. Insect photopigments group into three major gene families based on wavelength sensitivity: long wavelength (LW), short wavelength (SW), and ultraviolet wavelength (UV). In this study, we identified 123 opsin sequences from whole-genome assemblies across 25 caddisfly species (Insecta: Trichoptera). We discovered the LW opsins have the most diversity across species and form two separate clades in the opsin gene tree. Conversely, we observed a loss of the SW opsin in half of the trichopteran species in this study, which might be associated with the fact that caddisflies are active during low-light conditions. Lastly, we found a single copy of the UV opsin in all the species in this study, with one exception: Athripsodes cinereus has two copies of the UV opsin and resides within a clade of caddisflies with colorful wing patterns.</description><identifier>ISSN: 1759-6653</identifier><identifier>EISSN: 1759-6653</identifier><identifier>DOI: 10.1093/gbe/evae185</identifier><identifier>PMID: 39176990</identifier><language>eng</language><publisher>UK: Oxford University Press</publisher><subject>Animals ; Chromophores ; Evolution, Molecular ; Evolutionary genetics ; Gene families ; Insect Proteins - genetics ; Insecta ; Insecta - genetics ; Letter ; Opsins ; Opsins - genetics ; Photopigments ; Phylogeny ; Trichoptera ; Wavelength</subject><ispartof>Genome biology and evolution, 2024-09, Vol.16 (9)</ispartof><rights>The Author(s) 2024. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. 2024</rights><rights>The Author(s) 2024. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c329t-aa59ca5e43eb7e3b152541c67ed20ee79e6bccec2483e689de62062673c527093</cites><orcidid>0000-0001-6706-9190 ; 0000-0003-1853-6340 ; 0000-0002-6451-3425 ; 0000-0002-4801-7579 ; 0000-0001-8771-9154 ; 0000-0002-3921-0908 ; 0000-0002-7554-0816 ; 0000-0001-6224-6303 ; 0000-0002-6353-0450</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11381090/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11381090/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,1604,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39176990$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Wheat, Christopher</contributor><creatorcontrib>Powell, Ashlyn</creatorcontrib><creatorcontrib>Heckenhauer, Jacqueline</creatorcontrib><creatorcontrib>Pauls, Steffen U</creatorcontrib><creatorcontrib>Ríos-Touma, Blanca</creatorcontrib><creatorcontrib>Kuranishi, Ryoichi B</creatorcontrib><creatorcontrib>Holzenthal, Ralph W</creatorcontrib><creatorcontrib>Razuri-Gonzales, Ernesto</creatorcontrib><creatorcontrib>Bybee, Seth</creatorcontrib><creatorcontrib>Frandsen, Paul B</creatorcontrib><title>Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera)</title><title>Genome biology and evolution</title><addtitle>Genome Biol Evol</addtitle><description>Abstract
Insects have evolved complex and diverse visual systems in which light-sensing protein molecules called “opsins” couple with a chromophore to form photopigments. Insect photopigments group into three major gene families based on wavelength sensitivity: long wavelength (LW), short wavelength (SW), and ultraviolet wavelength (UV). In this study, we identified 123 opsin sequences from whole-genome assemblies across 25 caddisfly species (Insecta: Trichoptera). We discovered the LW opsins have the most diversity across species and form two separate clades in the opsin gene tree. Conversely, we observed a loss of the SW opsin in half of the trichopteran species in this study, which might be associated with the fact that caddisflies are active during low-light conditions. Lastly, we found a single copy of the UV opsin in all the species in this study, with one exception: Athripsodes cinereus has two copies of the UV opsin and resides within a clade of caddisflies with colorful wing patterns.</description><subject>Animals</subject><subject>Chromophores</subject><subject>Evolution, Molecular</subject><subject>Evolutionary genetics</subject><subject>Gene families</subject><subject>Insect Proteins - genetics</subject><subject>Insecta</subject><subject>Insecta - genetics</subject><subject>Letter</subject><subject>Opsins</subject><subject>Opsins - genetics</subject><subject>Photopigments</subject><subject>Phylogeny</subject><subject>Trichoptera</subject><subject>Wavelength</subject><issn>1759-6653</issn><issn>1759-6653</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>TOX</sourceid><recordid>eNp9kcFLwzAYxYMobk5P3qUgyETqkmZNGw-KjKmDwS7zHNL065bRNTVpB_73RjbH9ODpex_58ZKXh9AlwfcEczpYZDCAjQSSxkeoS5KYh4zF9PhAd9CZcyuMGRsyeoo6lJOEcY676HG8MWXbaFMFpghmtdNV8AoVuMCLkcxz7YpS-7U_qRyoRj4Ec6vV0tQNWHl7jk4KWTq42M0een8Zz0dv4XT2Ohk9T0NFI96EUsZcyRiGFLIEaEbiKB4SxRLIIwyQcGCZUqCiYUqBpTwHFmEWsYSqOEp8yB562vrWbbaGXEHVWFmK2uq1tJ_CSC1-n1R6KRZmIwihqf8l7B36OwdrPlpwjVhrp6AsZQWmdYJizqKUYX9nD13_QVemtZXPJyjBFBPMOPHU3ZZS1jhnodi_hmDxXYzwxYhdMZ6-OgywZ3-a8MDNFjBt_a_TF9nJlmk</recordid><startdate>20240903</startdate><enddate>20240903</enddate><creator>Powell, Ashlyn</creator><creator>Heckenhauer, Jacqueline</creator><creator>Pauls, Steffen U</creator><creator>Ríos-Touma, Blanca</creator><creator>Kuranishi, Ryoichi B</creator><creator>Holzenthal, Ralph W</creator><creator>Razuri-Gonzales, Ernesto</creator><creator>Bybee, Seth</creator><creator>Frandsen, Paul B</creator><general>Oxford University Press</general><scope>TOX</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K9.</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-6706-9190</orcidid><orcidid>https://orcid.org/0000-0003-1853-6340</orcidid><orcidid>https://orcid.org/0000-0002-6451-3425</orcidid><orcidid>https://orcid.org/0000-0002-4801-7579</orcidid><orcidid>https://orcid.org/0000-0001-8771-9154</orcidid><orcidid>https://orcid.org/0000-0002-3921-0908</orcidid><orcidid>https://orcid.org/0000-0002-7554-0816</orcidid><orcidid>https://orcid.org/0000-0001-6224-6303</orcidid><orcidid>https://orcid.org/0000-0002-6353-0450</orcidid></search><sort><creationdate>20240903</creationdate><title>Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera)</title><author>Powell, Ashlyn ; Heckenhauer, Jacqueline ; Pauls, Steffen U ; Ríos-Touma, Blanca ; Kuranishi, Ryoichi B ; Holzenthal, Ralph W ; Razuri-Gonzales, Ernesto ; Bybee, Seth ; Frandsen, Paul B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c329t-aa59ca5e43eb7e3b152541c67ed20ee79e6bccec2483e689de62062673c527093</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Animals</topic><topic>Chromophores</topic><topic>Evolution, Molecular</topic><topic>Evolutionary genetics</topic><topic>Gene families</topic><topic>Insect Proteins - genetics</topic><topic>Insecta</topic><topic>Insecta - genetics</topic><topic>Letter</topic><topic>Opsins</topic><topic>Opsins - genetics</topic><topic>Photopigments</topic><topic>Phylogeny</topic><topic>Trichoptera</topic><topic>Wavelength</topic><toplevel>online_resources</toplevel><creatorcontrib>Powell, Ashlyn</creatorcontrib><creatorcontrib>Heckenhauer, Jacqueline</creatorcontrib><creatorcontrib>Pauls, Steffen U</creatorcontrib><creatorcontrib>Ríos-Touma, Blanca</creatorcontrib><creatorcontrib>Kuranishi, Ryoichi B</creatorcontrib><creatorcontrib>Holzenthal, Ralph W</creatorcontrib><creatorcontrib>Razuri-Gonzales, Ernesto</creatorcontrib><creatorcontrib>Bybee, Seth</creatorcontrib><creatorcontrib>Frandsen, Paul B</creatorcontrib><collection>Open Access: Oxford University Press Open Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genome biology and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Powell, Ashlyn</au><au>Heckenhauer, Jacqueline</au><au>Pauls, Steffen U</au><au>Ríos-Touma, Blanca</au><au>Kuranishi, Ryoichi B</au><au>Holzenthal, Ralph W</au><au>Razuri-Gonzales, Ernesto</au><au>Bybee, Seth</au><au>Frandsen, Paul B</au><au>Wheat, Christopher</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera)</atitle><jtitle>Genome biology and evolution</jtitle><addtitle>Genome Biol Evol</addtitle><date>2024-09-03</date><risdate>2024</risdate><volume>16</volume><issue>9</issue><issn>1759-6653</issn><eissn>1759-6653</eissn><abstract>Abstract
Insects have evolved complex and diverse visual systems in which light-sensing protein molecules called “opsins” couple with a chromophore to form photopigments. Insect photopigments group into three major gene families based on wavelength sensitivity: long wavelength (LW), short wavelength (SW), and ultraviolet wavelength (UV). In this study, we identified 123 opsin sequences from whole-genome assemblies across 25 caddisfly species (Insecta: Trichoptera). We discovered the LW opsins have the most diversity across species and form two separate clades in the opsin gene tree. Conversely, we observed a loss of the SW opsin in half of the trichopteran species in this study, which might be associated with the fact that caddisflies are active during low-light conditions. Lastly, we found a single copy of the UV opsin in all the species in this study, with one exception: Athripsodes cinereus has two copies of the UV opsin and resides within a clade of caddisflies with colorful wing patterns.</abstract><cop>UK</cop><pub>Oxford University Press</pub><pmid>39176990</pmid><doi>10.1093/gbe/evae185</doi><orcidid>https://orcid.org/0000-0001-6706-9190</orcidid><orcidid>https://orcid.org/0000-0003-1853-6340</orcidid><orcidid>https://orcid.org/0000-0002-6451-3425</orcidid><orcidid>https://orcid.org/0000-0002-4801-7579</orcidid><orcidid>https://orcid.org/0000-0001-8771-9154</orcidid><orcidid>https://orcid.org/0000-0002-3921-0908</orcidid><orcidid>https://orcid.org/0000-0002-7554-0816</orcidid><orcidid>https://orcid.org/0000-0001-6224-6303</orcidid><orcidid>https://orcid.org/0000-0002-6353-0450</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Animals Chromophores Evolution, Molecular Evolutionary genetics Gene families Insect Proteins - genetics Insecta Insecta - genetics Letter Opsins Opsins - genetics Photopigments Phylogeny Trichoptera Wavelength |
title | Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera) |
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