A Comparative Evaluation of the Genetic Variant Spectrum in the USH2A Gene in Russian Patients with Isolated and Syndromic Forms of Retinitis Pigmentosa

• Published in: International journal of molecular sciences 2024-11, Vol.25 (22), p.12169
• Main Authors: Ogorodova, Natalya, Stepanova, Anna, Kadyshev, Vitaly, Kuznetsova, Svetlana, Ismagilova, Olga, Chukhrova, Alena, Polyakov, Aleksandr, Kutsev, Sergey, Shchagina, Olga
• Format: Article
• Language: English
• Subjects: Adolescent; Adult; Blindness; Child; Chromosomes; Comparative analysis; Development and progression; Disease; Extracellular Matrix Proteins - genetics; Female; Genes; Genetic aspects; Genetic disorders; Genetic Variation; Hearing loss; Humans; Male; Medical research; Medicine, Experimental; Middle Aged; Mutation; Patients; Photoreceptors; Proteins; Retinitis pigmentosa; Retinitis Pigmentosa - genetics; Retrospective Studies; Russia - epidemiology; Visual impairment; Young Adult
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms252212169

Pathogenic variants in the gene are the primary cause of both non-syndromic autosomal recessive inherited retinitis pigmentosa (RP) and the syndromic form, characterized by retinal degeneration and sensorineural hearing loss. This study presents a comparative assessment of the genetic variant spectrum in the gene among Russian patients in two clinical groups. A retrospective analysis was conducted on massive parallel panel sequencing data from 2415 blood samples of unrelated patients suspected of having hereditary retinal diseases. The copy number of exons was determined using the quantitative MLPA method with the MRC-Holland SALSA MLPA kit. Biallelic pathogenic and likely pathogenic variants in the gene were identified in 69 patients (8.7%). In the group of patients with isolated hereditary RP (55 patients), the most frequent pathogenic variants were p.(Glu4445_Ser4449delinsAspLeu) (20.9%), p.(Trp3955*) (15.5%), and p.(Cys934Trp) (5.5%). In patients with the syndromic form (14 patients), the most frequent variants were p.(Trp3955*) (35.7%) and c.8682-9A>G (17.9%). It was found that patients with isolated vision impairment rarely had two "null" variants (17.8%), whereas this was common among patients with both hearing and vision impairment (71.4%) ( ≤ 0.05), explaining the severity of the disease and the earlier onset of clinical symptoms in the syndromic form of RP. Ten previously undescribed loss-of-function variants were identified. The estimated prevalence of -associated retinal dystrophy in Russia was 1.9 per 100,000 individuals. The obtained data on the differences in the spectra of genetic variants in the gene in the two studied groups highlight the importance of establishing genotype-phenotype correlations and predicting disease severity, aiming at potential early cochlear implantation and selection of target therapy.