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Structure of Dipalmitoylphosphatidylcholine/Cholesterol Bilayer at Low and High Cholesterol Concentrations: Molecular Dynamics Simulation
By using molecular dynamics simulation technique we studied the changes occurring in membranes constructed of dipalmitoylphosphatidylcholine (DPPC) and cholesterol at 8:1 and 1:1 ratios. We tested two different initial arrangements of cholesterol molecules for a 1:1 ratio. The main difference betwee...
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Published in: | Biophysical journal 1999-10, Vol.77 (4), p.2075-2089 |
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creator | Smondyrev, Alexander M. Berkowitz, Max L. |
description | By using molecular dynamics simulation technique we studied the changes occurring in membranes constructed of dipalmitoylphosphatidylcholine (DPPC) and cholesterol at 8:1 and 1:1 ratios. We tested two different initial arrangements of cholesterol molecules for a 1:1 ratio. The main difference between two initial structures is the average number of nearest-neighbor DPPC molecules around the cholesterol molecule. Our simulations were performed at constant temperature (
T
=
50°C) and pressure (
P
=
0 atm). Durations of the runs were 2
ns. The structure of the DPPC/cholesterol membrane was characterized by calculating the order parameter profiles for the hydrocarbon chains, atom distributions, average number of
gauche defects, and membrane dipole potentials. We found that adding cholesterol to membranes results in a condensing effect: the average area of membrane becomes smaller, hydrocarbon chains of DPPC have higher order, and the probability of
gauche defects in DPPC tails is lower. Our results are in agreement with the data available from experiments. |
doi_str_mv | 10.1016/S0006-3495(99)77049-9 |
format | article |
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T
=
50°C) and pressure (
P
=
0 atm). Durations of the runs were 2
ns. The structure of the DPPC/cholesterol membrane was characterized by calculating the order parameter profiles for the hydrocarbon chains, atom distributions, average number of
gauche defects, and membrane dipole potentials. We found that adding cholesterol to membranes results in a condensing effect: the average area of membrane becomes smaller, hydrocarbon chains of DPPC have higher order, and the probability of
gauche defects in DPPC tails is lower. Our results are in agreement with the data available from experiments.</description><identifier>ISSN: 0006-3495</identifier><identifier>EISSN: 1542-0086</identifier><identifier>DOI: 10.1016/S0006-3495(99)77049-9</identifier><identifier>PMID: 10512828</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>1,2-Dipalmitoylphosphatidylcholine - chemistry ; 1,2-Dipalmitoylphosphatidylcholine - metabolism ; Cholesterol - chemistry ; Cholesterol - metabolism ; Computer Simulation ; Dimerization ; Electrons ; Hydrogen Bonding ; Kinetics ; Lipid Bilayers - chemistry ; Lipid Bilayers - metabolism ; Models, Molecular ; Molecular Structure ; Pressure ; Temperature ; Water - metabolism</subject><ispartof>Biophysical journal, 1999-10, Vol.77 (4), p.2075-2089</ispartof><rights>1999 The Biophysical Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c550t-cd00b8cc5b799dc75732212bc497e66bd07e591c74aff96f2a25d13b62b4fc253</citedby><cites>FETCH-LOGICAL-c550t-cd00b8cc5b799dc75732212bc497e66bd07e591c74aff96f2a25d13b62b4fc253</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300489/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300489/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27923,27924,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10512828$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Smondyrev, Alexander M.</creatorcontrib><creatorcontrib>Berkowitz, Max L.</creatorcontrib><title>Structure of Dipalmitoylphosphatidylcholine/Cholesterol Bilayer at Low and High Cholesterol Concentrations: Molecular Dynamics Simulation</title><title>Biophysical journal</title><addtitle>Biophys J</addtitle><description>By using molecular dynamics simulation technique we studied the changes occurring in membranes constructed of dipalmitoylphosphatidylcholine (DPPC) and cholesterol at 8:1 and 1:1 ratios. We tested two different initial arrangements of cholesterol molecules for a 1:1 ratio. The main difference between two initial structures is the average number of nearest-neighbor DPPC molecules around the cholesterol molecule. Our simulations were performed at constant temperature (
T
=
50°C) and pressure (
P
=
0 atm). Durations of the runs were 2
ns. The structure of the DPPC/cholesterol membrane was characterized by calculating the order parameter profiles for the hydrocarbon chains, atom distributions, average number of
gauche defects, and membrane dipole potentials. We found that adding cholesterol to membranes results in a condensing effect: the average area of membrane becomes smaller, hydrocarbon chains of DPPC have higher order, and the probability of
gauche defects in DPPC tails is lower. Our results are in agreement with the data available from experiments.</description><subject>1,2-Dipalmitoylphosphatidylcholine - chemistry</subject><subject>1,2-Dipalmitoylphosphatidylcholine - metabolism</subject><subject>Cholesterol - chemistry</subject><subject>Cholesterol - metabolism</subject><subject>Computer Simulation</subject><subject>Dimerization</subject><subject>Electrons</subject><subject>Hydrogen Bonding</subject><subject>Kinetics</subject><subject>Lipid Bilayers - chemistry</subject><subject>Lipid Bilayers - metabolism</subject><subject>Models, Molecular</subject><subject>Molecular Structure</subject><subject>Pressure</subject><subject>Temperature</subject><subject>Water - metabolism</subject><issn>0006-3495</issn><issn>1542-0086</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><recordid>eNqFUctu1DAUtSpQOy18QisvYZH22omTmAWITgtFGsRiYG05ttMYOXFke4ryCf3rZhpUDStWV7rncR8HoXMClwRIebUFgDLLC87ecf6-qqDgGT9CK8IKmgHU5Su0eqGcoNMYfwMQyoAcoxMCjNCa1iv0uE1hp9IuGOxbfGNH6Xqb_OTGzsexk8nqyanOOzuYq_VcTUwmeIevrZOTCVgmvPF_sBw0vrP3HT7krP2gzJDC7OKH-AF_nyG1czLgm2mQvVURb20_N_b4G_S6lS6at3_rGfr15fbn-i7b_Pj6bf15kynGIGVKAzS1UqypONeqYlVOKaGNKnhlyrLRUBnGiaoK2ba8bKmkTJO8KWlTtIqy_Ax9XHzHXdMbvSzoxBhsL8MkvLTiX2Swnbj3D4LkAEXNZwO2GKjgYwymfdESEPtsxHM2Yv94wbl4zkbsdReHgw9USxgz4dNCMPP5D9YEEZU18wu1DUYlob39z4gn9ZmkUg</recordid><startdate>19991001</startdate><enddate>19991001</enddate><creator>Smondyrev, Alexander M.</creator><creator>Berkowitz, Max L.</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>19991001</creationdate><title>Structure of Dipalmitoylphosphatidylcholine/Cholesterol Bilayer at Low and High Cholesterol Concentrations: Molecular Dynamics Simulation</title><author>Smondyrev, Alexander M. ; Berkowitz, Max L.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c550t-cd00b8cc5b799dc75732212bc497e66bd07e591c74aff96f2a25d13b62b4fc253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>1,2-Dipalmitoylphosphatidylcholine - chemistry</topic><topic>1,2-Dipalmitoylphosphatidylcholine - metabolism</topic><topic>Cholesterol - chemistry</topic><topic>Cholesterol - metabolism</topic><topic>Computer Simulation</topic><topic>Dimerization</topic><topic>Electrons</topic><topic>Hydrogen Bonding</topic><topic>Kinetics</topic><topic>Lipid Bilayers - chemistry</topic><topic>Lipid Bilayers - metabolism</topic><topic>Models, Molecular</topic><topic>Molecular Structure</topic><topic>Pressure</topic><topic>Temperature</topic><topic>Water - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Smondyrev, Alexander M.</creatorcontrib><creatorcontrib>Berkowitz, Max L.</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biophysical journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Smondyrev, Alexander M.</au><au>Berkowitz, Max L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structure of Dipalmitoylphosphatidylcholine/Cholesterol Bilayer at Low and High Cholesterol Concentrations: Molecular Dynamics Simulation</atitle><jtitle>Biophysical journal</jtitle><addtitle>Biophys J</addtitle><date>1999-10-01</date><risdate>1999</risdate><volume>77</volume><issue>4</issue><spage>2075</spage><epage>2089</epage><pages>2075-2089</pages><issn>0006-3495</issn><eissn>1542-0086</eissn><abstract>By using molecular dynamics simulation technique we studied the changes occurring in membranes constructed of dipalmitoylphosphatidylcholine (DPPC) and cholesterol at 8:1 and 1:1 ratios. We tested two different initial arrangements of cholesterol molecules for a 1:1 ratio. The main difference between two initial structures is the average number of nearest-neighbor DPPC molecules around the cholesterol molecule. Our simulations were performed at constant temperature (
T
=
50°C) and pressure (
P
=
0 atm). Durations of the runs were 2
ns. The structure of the DPPC/cholesterol membrane was characterized by calculating the order parameter profiles for the hydrocarbon chains, atom distributions, average number of
gauche defects, and membrane dipole potentials. We found that adding cholesterol to membranes results in a condensing effect: the average area of membrane becomes smaller, hydrocarbon chains of DPPC have higher order, and the probability of
gauche defects in DPPC tails is lower. Our results are in agreement with the data available from experiments.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>10512828</pmid><doi>10.1016/S0006-3495(99)77049-9</doi><tpages>15</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 1,2-Dipalmitoylphosphatidylcholine - chemistry 1,2-Dipalmitoylphosphatidylcholine - metabolism Cholesterol - chemistry Cholesterol - metabolism Computer Simulation Dimerization Electrons Hydrogen Bonding Kinetics Lipid Bilayers - chemistry Lipid Bilayers - metabolism Models, Molecular Molecular Structure Pressure Temperature Water - metabolism |
title | Structure of Dipalmitoylphosphatidylcholine/Cholesterol Bilayer at Low and High Cholesterol Concentrations: Molecular Dynamics Simulation |
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