O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins

O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is no...

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Bibliographic Details
Published in:Nucleic acids research 1997, Vol.25 (1), p.278-282
Main Authors: Hansen, J.E, Lund, O, Rapacki, K, Brunak, S
Format: Article
Language:English
Subjects:
Algorithms
Amino Acid Sequence
Animals
chemical structure
Databases, Factual
glycoproteins
Glycoproteins - chemistry
Glycosylation
Humans
information retrieval
Molecular Sequence Data
Mucins - chemistry
oligosaccharides
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Summary:O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is now fully cross-referenced to the SWISS-PROT; PIR, PROSITE, PDB, EMBL, HSSP, LISTA and MIM databases. Compared with version 1.0 the number of entries have increased by 34%. Revision of the O-glycan assignment was performed on 20% of the entries. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through WWW or by anonymous FTP.
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/25.1.278