The tmRNA database (tmRDB)

As of September, 1998, a total of 43 sequences are contained within the tmRNA database (tmRDB). the tmRNA sequences are arranged alphabetically and ordered phylogenetically. The alignment of the tmRNAS emphasizes the basepairs that are supported by comparative sequence analysis and establishes minim...

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Published in:Nucleic acids research 1999, Vol.27 (1), p.167-167
Main Authors: Wower, Jacek, Zwieb, Christian
Format: Article
Language:English
Subjects:
Bacteria - genetics
Databases, Factual
Internet
Models, Molecular
Nucleic Acid Conformation
RNA, Bacterial - chemistry
RNA, Bacterial - genetics
Sequence Alignment
Software
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description As of September, 1998, a total of 43 sequences are contained within the tmRNA database (tmRDB). the tmRNA sequences are arranged alphabetically and ordered phylogenetically. The alignment of the tmRNAS emphasizes the basepairs that are supported by comparative sequence analysis and establishes minimal secondary structures for the known tmRNAs. A corresponding alignment of the predicted tmrnaencoded tag peptides is presented. the tmRDB also offers a small number of RNA secondary structure diagrams and PDB-formatted three-dimensional models generated with the program ERNA-3D. The data are available freely at the URL http://psyche.uthct.edu/dbs/tmRDB/tmRDB.html
doi_str_mv 10.1093/nar/27.1.167
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source PubMed (Medline); Oxford Academic Journals (Open Access)
subjects Bacteria - genetics
Databases, Factual
Internet
Models, Molecular
Nucleic Acid Conformation
RNA, Bacterial - chemistry
RNA, Bacterial - genetics
Sequence Alignment
Software
title The tmRNA database (tmRDB)
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