Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of...

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Bibliographic Details
Published in:Nucleic acids research 2003-07, Vol.31 (13), p.3651-3653
Main Authors: Farré, Domènec, Roset, Romà, Huerta, Mario, Adsuara, José E., Roselló, Llorenç, Albà, M. Mar, Messeguer, Xavier
Format: Article
Language:English
Subjects:
Animals
Binding Sites
Computer Graphics
Conserved Sequence
Genome
Humans
Internet
Regulatory Sequences, Nucleic Acid
Sequence Alignment
Sequence Analysis, DNA - methods
Software
Transcription Factors
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Summary:In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).
ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/gkg605