integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a lar...

Full description

Saved in:
Bibliographic Details
Published in:Nucleic acids research 2008-01, Vol.36 (suppl-1), p.D528-D533
Main Authors: Markowitz, Victor M, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I. Min A, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N, Kyrpides, Nikos C
Format: Article
Language:English
Subjects:
Databases, Genetic
Genome, Archaeal
Genome, Bacterial
Genome, Viral
Genomics
Internet
Plasmids - genetics
Proteins - chemistry
Proteins - genetics
Software
Systems Integration
Citations: Items that this one cites
Items that cite this one
Online Access:Request full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c711t-e397cf198a1d519d34a00c47c7f254c3af70012aca3f8caf6c1a7981e1b214a53
cites cdi_FETCH-LOGICAL-c711t-e397cf198a1d519d34a00c47c7f254c3af70012aca3f8caf6c1a7981e1b214a53
container_end_page D533
container_issue suppl-1
container_start_page D528
container_title Nucleic acids research
container_volume 36
creator Markowitz, Victor M
Szeto, Ernest
Palaniappan, Krishna
Grechkin, Yuri
Chu, Ken
Chen, I. Min A
Dubchak, Inna
Anderson, Iain
Lykidis, Athanasios
Mavromatis, Konstantinos
Ivanova, Natalia N
Kyrpides, Nikos C
description The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov.
doi_str_mv 10.1093/nar/gkm846
format article
fullrecord <record><control><sourceid>proquest_TOX</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_2238897</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1093/nar/gkm846</oup_id><sourcerecordid>19998058</sourcerecordid><originalsourceid>FETCH-LOGICAL-c711t-e397cf198a1d519d34a00c47c7f254c3af70012aca3f8caf6c1a7981e1b214a53</originalsourceid><addsrcrecordid>eNqN0stu1DAUBuAIgehQ2PAAECGBACnUx5fYZoGEKpgWSllABUJI1qnjDG6TeLAzqPP2uGRULgvahZWFvxxbv_-iuAvkGRDNdgaMO4vTXvH6WjEDVtOK65peL2aEEVEB4WqruJXSCSHAQfCbxRZIzZhUdFZ89cPoFhFH15S9tzEce-zKhRtC71L5eP_d_EmZ1ml0femHkhIin5cNjljakH8cxhKHJi_s1smncgyhK91Z3kg-DOl2caPFLrk7m-92cfT61cfdverg_Xx_9-VBZSXAWDmmpW1BK4RGgG4YR0Isl1a2VHDLsJX56hQtslZZbGsLKLUCB8cUOAq2XbyY5i5Xx71rbL5XxM4so-8xrk1Ab_7eGfw3swg_DKVMKS3zgEebATF8X7k0mt4n67oOBxdWyUhCAai6HOaABHBFrwKpqLW6FILWWhFxFVgLzfl5Gg_-gSdhFfMT_Tq1FiJnnNHTCeUnTym69iItIOa8VSa3ykytyvjen_n-ppsaZfBwAmG1_P-ganI-N-rsQmI8NbVkUpi9z18MfftJvDmcHxqW_f3JtxgMLqJP5ugDJcAIUVwxpthPvWvs6A</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>200655519</pqid></control><display><type>article</type><title>integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions</title><source>Oxford Open</source><creator>Markowitz, Victor M ; Szeto, Ernest ; Palaniappan, Krishna ; Grechkin, Yuri ; Chu, Ken ; Chen, I. Min A ; Dubchak, Inna ; Anderson, Iain ; Lykidis, Athanasios ; Mavromatis, Konstantinos ; Ivanova, Natalia N ; Kyrpides, Nikos C</creator><creatorcontrib>Markowitz, Victor M ; Szeto, Ernest ; Palaniappan, Krishna ; Grechkin, Yuri ; Chu, Ken ; Chen, I. Min A ; Dubchak, Inna ; Anderson, Iain ; Lykidis, Athanasios ; Mavromatis, Konstantinos ; Ivanova, Natalia N ; Kyrpides, Nikos C</creatorcontrib><description>The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkm846</identifier><identifier>PMID: 17933782</identifier><identifier>CODEN: NARHAD</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Databases, Genetic ; Genome, Archaeal ; Genome, Bacterial ; Genome, Viral ; Genomics ; Internet ; Plasmids - genetics ; Proteins - chemistry ; Proteins - genetics ; Software ; Systems Integration</subject><ispartof>Nucleic acids research, 2008-01, Vol.36 (suppl-1), p.D528-D533</ispartof><rights>2007 The Author(s) 2007</rights><rights>2007 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c711t-e397cf198a1d519d34a00c47c7f254c3af70012aca3f8caf6c1a7981e1b214a53</citedby><cites>FETCH-LOGICAL-c711t-e397cf198a1d519d34a00c47c7f254c3af70012aca3f8caf6c1a7981e1b214a53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238897/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238897/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,1604,27923,27924,53790,53792</link.rule.ids><linktorsrc>$$Uhttps://dx.doi.org/10.1093/nar/gkm846$$EView_record_in_Oxford_University_Press$$FView_record_in_$$GOxford_University_Press</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17933782$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Markowitz, Victor M</creatorcontrib><creatorcontrib>Szeto, Ernest</creatorcontrib><creatorcontrib>Palaniappan, Krishna</creatorcontrib><creatorcontrib>Grechkin, Yuri</creatorcontrib><creatorcontrib>Chu, Ken</creatorcontrib><creatorcontrib>Chen, I. Min A</creatorcontrib><creatorcontrib>Dubchak, Inna</creatorcontrib><creatorcontrib>Anderson, Iain</creatorcontrib><creatorcontrib>Lykidis, Athanasios</creatorcontrib><creatorcontrib>Mavromatis, Konstantinos</creatorcontrib><creatorcontrib>Ivanova, Natalia N</creatorcontrib><creatorcontrib>Kyrpides, Nikos C</creatorcontrib><title>integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov.</description><subject>Databases, Genetic</subject><subject>Genome, Archaeal</subject><subject>Genome, Bacterial</subject><subject>Genome, Viral</subject><subject>Genomics</subject><subject>Internet</subject><subject>Plasmids - genetics</subject><subject>Proteins - chemistry</subject><subject>Proteins - genetics</subject><subject>Software</subject><subject>Systems Integration</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqN0stu1DAUBuAIgehQ2PAAECGBACnUx5fYZoGEKpgWSllABUJI1qnjDG6TeLAzqPP2uGRULgvahZWFvxxbv_-iuAvkGRDNdgaMO4vTXvH6WjEDVtOK65peL2aEEVEB4WqruJXSCSHAQfCbxRZIzZhUdFZ89cPoFhFH15S9tzEce-zKhRtC71L5eP_d_EmZ1ml0femHkhIin5cNjljakH8cxhKHJi_s1smncgyhK91Z3kg-DOl2caPFLrk7m-92cfT61cfdverg_Xx_9-VBZSXAWDmmpW1BK4RGgG4YR0Isl1a2VHDLsJX56hQtslZZbGsLKLUCB8cUOAq2XbyY5i5Xx71rbL5XxM4so-8xrk1Ab_7eGfw3swg_DKVMKS3zgEebATF8X7k0mt4n67oOBxdWyUhCAai6HOaABHBFrwKpqLW6FILWWhFxFVgLzfl5Gg_-gSdhFfMT_Tq1FiJnnNHTCeUnTym69iItIOa8VSa3ykytyvjen_n-ppsaZfBwAmG1_P-ganI-N-rsQmI8NbVkUpi9z18MfftJvDmcHxqW_f3JtxgMLqJP5ugDJcAIUVwxpthPvWvs6A</recordid><startdate>20080101</startdate><enddate>20080101</enddate><creator>Markowitz, Victor M</creator><creator>Szeto, Ernest</creator><creator>Palaniappan, Krishna</creator><creator>Grechkin, Yuri</creator><creator>Chu, Ken</creator><creator>Chen, I. Min A</creator><creator>Dubchak, Inna</creator><creator>Anderson, Iain</creator><creator>Lykidis, Athanasios</creator><creator>Mavromatis, Konstantinos</creator><creator>Ivanova, Natalia N</creator><creator>Kyrpides, Nikos C</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7T7</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20080101</creationdate><title>integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions</title><author>Markowitz, Victor M ; Szeto, Ernest ; Palaniappan, Krishna ; Grechkin, Yuri ; Chu, Ken ; Chen, I. Min A ; Dubchak, Inna ; Anderson, Iain ; Lykidis, Athanasios ; Mavromatis, Konstantinos ; Ivanova, Natalia N ; Kyrpides, Nikos C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c711t-e397cf198a1d519d34a00c47c7f254c3af70012aca3f8caf6c1a7981e1b214a53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Databases, Genetic</topic><topic>Genome, Archaeal</topic><topic>Genome, Bacterial</topic><topic>Genome, Viral</topic><topic>Genomics</topic><topic>Internet</topic><topic>Plasmids - genetics</topic><topic>Proteins - chemistry</topic><topic>Proteins - genetics</topic><topic>Software</topic><topic>Systems Integration</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Markowitz, Victor M</creatorcontrib><creatorcontrib>Szeto, Ernest</creatorcontrib><creatorcontrib>Palaniappan, Krishna</creatorcontrib><creatorcontrib>Grechkin, Yuri</creatorcontrib><creatorcontrib>Chu, Ken</creatorcontrib><creatorcontrib>Chen, I. Min A</creatorcontrib><creatorcontrib>Dubchak, Inna</creatorcontrib><creatorcontrib>Anderson, Iain</creatorcontrib><creatorcontrib>Lykidis, Athanasios</creatorcontrib><creatorcontrib>Mavromatis, Konstantinos</creatorcontrib><creatorcontrib>Ivanova, Natalia N</creatorcontrib><creatorcontrib>Kyrpides, Nikos C</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Markowitz, Victor M</au><au>Szeto, Ernest</au><au>Palaniappan, Krishna</au><au>Grechkin, Yuri</au><au>Chu, Ken</au><au>Chen, I. Min A</au><au>Dubchak, Inna</au><au>Anderson, Iain</au><au>Lykidis, Athanasios</au><au>Mavromatis, Konstantinos</au><au>Ivanova, Natalia N</au><au>Kyrpides, Nikos C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2008-01-01</date><risdate>2008</risdate><volume>36</volume><issue>suppl-1</issue><spage>D528</spage><epage>D533</epage><pages>D528-D533</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><coden>NARHAD</coden><abstract>The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and annotating genomes, genes and functions, individually or in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through quarterly releases. IMG is provided by the DOE-Joint Genome Institute (JGI) and is available from http://img.jgi.doe.gov.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>17933782</pmid><doi>10.1093/nar/gkm846</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext_linktorsrc
identifier ISSN: 0305-1048
ispartof Nucleic acids research, 2008-01, Vol.36 (suppl-1), p.D528-D533
issn 0305-1048
1362-4962
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_2238897
source Oxford Open
subjects Databases, Genetic
Genome, Archaeal
Genome, Bacterial
Genome, Viral
Genomics
Internet
Plasmids - genetics
Proteins - chemistry
Proteins - genetics
Software
Systems Integration
title integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-08T23%3A48%3A54IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_TOX&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=integrated%20microbial%20genomes%20(IMG)%20system%20in%202007:%20data%20content%20and%20analysis%20tool%20extensions&rft.jtitle=Nucleic%20acids%20research&rft.au=Markowitz,%20Victor%20M&rft.date=2008-01-01&rft.volume=36&rft.issue=suppl-1&rft.spage=D528&rft.epage=D533&rft.pages=D528-D533&rft.issn=0305-1048&rft.eissn=1362-4962&rft.coden=NARHAD&rft_id=info:doi/10.1093/nar/gkm846&rft_dat=%3Cproquest_TOX%3E19998058%3C/proquest_TOX%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c711t-e397cf198a1d519d34a00c47c7f254c3af70012aca3f8caf6c1a7981e1b214a53%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=200655519&rft_id=info:pmid/17933782&rft_oup_id=10.1093/nar/gkm846&rfr_iscdi=true