RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural cla...

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Bibliographic Details
Published in:Nucleic acids research 2008-01, Vol.36 (suppl-1), p.D392-D397
Main Authors: Bindewald, Eckart, Hayes, Robert, Yingling, Yaroslava G., Kasprzak, Wojciech, Shapiro, Bruce A.
Format: Article
Language:English
Subjects:
Algorithms
Databases, Nucleic Acid
Internet
Nanostructures - chemistry
Nanotechnology
Nucleic Acid Conformation
RNA - chemistry
Sequence Analysis, RNA
User-Computer Interface
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Summary:We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designing novel RNA structures on a nanoscale. The database can be accessed at: http://rnajunction.abcc.ncifcrf.gov/
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gkm842