Gallus GBrowse: a unified genomic database for the chicken

Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource includes predicted genes and Gene Ontology (GO) terms, links to Gallus In Situ Hybridization Analysis (GEIS...

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Bibliographic Details
Published in:Nucleic acids research 2008-01, Vol.36 (suppl-1), p.D719-D723
Main Authors: Schmidt, Carl J., Romanov, Michael, Ryder, Oliver, Magrini, Vincent, Hickenbotham, Matthew, Glasscock, Jarret, McGrath, Sean, Mardis, Elaine, Stein, Lincoln D.
Format: Article
Language:English
Subjects:
Animals
Chickens - genetics
Chickens - metabolism
Chromosome Mapping
Databases, Genetic
Gallus
Gallus gallus
Gene Expression Profiling
Genetic Markers
Genomics
Internet
Polymorphism, Single Nucleotide
Software
Taeniopygia guttata
User-Computer Interface
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Description
Summary:Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource includes predicted genes and Gene Ontology (GO) terms, links to Gallus In Situ Hybridization Analysis (GEISHA), Unigene and Reactome, the genomic positions of chicken genetic markers, SNPs and microarray probes, and mappings from turkey, condor and zebra finch DNA and EST sequences to the chicken genome. We also provide a BLAT server (http://birdbase.net/cgi-bin/webBlat) for matching user-provided sequences to the chicken genome. These tools make the Gallus GBrowse server a valuable resource for researchers seeking genomic information regarding the chicken and other avian species.
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gkm783