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RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea
Archaeal methane formation from methylamines is initiated by distinct methyltransferases with specificity for monomethylamine, dimethylamine, or trimethylamine. Each methylamine methyltransferase methylates a cognate corrinoid protein, which is subsequently demethylated by a second methyltransferase...
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Published in: | The Journal of biological chemistry 2009-01, Vol.284 (4), p.2285-2295 |
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description | Archaeal methane formation from methylamines is initiated by distinct methyltransferases with specificity for monomethylamine, dimethylamine, or trimethylamine. Each methylamine methyltransferase methylates a cognate corrinoid protein, which is subsequently demethylated by a second methyltransferase to form methyl-coenzyme M, the direct methane precursor. Methylation of the corrinoid protein requires reduction of the central cobalt to the highly reducing and nucleophilic Co(I) state. RamA, a 60-kDa monomeric iron-sulfur protein, was isolated from Methanosarcina barkeri and is required for in vitro ATP-dependent reductive activation of methylamine:CoM methyl transfer from all three methylamines. In the absence of the methyltransferases, highly purified RamA was shown to mediate the ATP-dependent reductive activation of Co(II) corrinoid to the Co(I) state for the monomethylamine corrinoid protein, MtmC. The ramA gene is located near a cluster of genes required for monomethylamine methyltransferase activity, including MtbA, the methylamine-specific CoM methylase and the pyl operon required for co-translational insertion of pyrrolysine into the active site of methylamine methyltransferases. RamA possesses a C-terminal ferredoxin-like domain capable of binding two tetranuclear iron-sulfur proteins. Mutliple ramA homologs were identified in genomes of methanogenic Archaea, often encoded near methyltrophic methyltransferase genes. RamA homologs are also encoded in a diverse selection of bacterial genomes, often located near genes for corrinoid-dependent methyltransferases. These results suggest that RamA mediates reductive activation of corrinoid proteins and that it is the first functional archetype of COG3894, a family of redox proteins of unknown function. |
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Each methylamine methyltransferase methylates a cognate corrinoid protein, which is subsequently demethylated by a second methyltransferase to form methyl-coenzyme M, the direct methane precursor. Methylation of the corrinoid protein requires reduction of the central cobalt to the highly reducing and nucleophilic Co(I) state. RamA, a 60-kDa monomeric iron-sulfur protein, was isolated from Methanosarcina barkeri and is required for in vitro ATP-dependent reductive activation of methylamine:CoM methyl transfer from all three methylamines. In the absence of the methyltransferases, highly purified RamA was shown to mediate the ATP-dependent reductive activation of Co(II) corrinoid to the Co(I) state for the monomethylamine corrinoid protein, MtmC. The ramA gene is located near a cluster of genes required for monomethylamine methyltransferase activity, including MtbA, the methylamine-specific CoM methylase and the pyl operon required for co-translational insertion of pyrrolysine into the active site of methylamine methyltransferases. RamA possesses a C-terminal ferredoxin-like domain capable of binding two tetranuclear iron-sulfur proteins. Mutliple ramA homologs were identified in genomes of methanogenic Archaea, often encoded near methyltrophic methyltransferase genes. RamA homologs are also encoded in a diverse selection of bacterial genomes, often located near genes for corrinoid-dependent methyltransferases. These results suggest that RamA mediates reductive activation of corrinoid proteins and that it is the first functional archetype of COG3894, a family of redox proteins of unknown function.</description><identifier>ISSN: 0021-9258</identifier><identifier>EISSN: 1083-351X</identifier><identifier>DOI: 10.1074/jbc.M807392200</identifier><identifier>PMID: 19043046</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Adenosine Triphosphate - metabolism ; Archaea ; Archaeal Proteins - genetics ; Archaeal Proteins - isolation & purification ; Archaeal Proteins - metabolism ; Corrinoids - metabolism ; Enzyme Activation ; Enzyme Catalysis and Regulation ; Ferredoxins - genetics ; Ferredoxins - metabolism ; Genome, Archaeal - genetics ; Methanosarcina barkeri ; Methanosarcina barkeri - metabolism ; Methylation ; Methyltransferases - metabolism ; Time Factors</subject><ispartof>The Journal of biological chemistry, 2009-01, Vol.284 (4), p.2285-2295</ispartof><rights>2009 © 2009 ASBMB. Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology.</rights><rights>Copyright © 2009, The American Society for Biochemistry and Molecular Biology, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c519t-f9d369069f330ca125acff55cc5d776656f75a45b4e889e7f7527ed9dcd4e3b13</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629093/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0021925819819397$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,3535,27903,27904,45759,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19043046$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ferguson, Tsuneo</creatorcontrib><creatorcontrib>Soares, Jitesh A.</creatorcontrib><creatorcontrib>Lienard, Tanja</creatorcontrib><creatorcontrib>Gottschalk, Gerhard</creatorcontrib><creatorcontrib>Krzycki, Joseph A.</creatorcontrib><title>RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea</title><title>The Journal of biological chemistry</title><addtitle>J Biol Chem</addtitle><description>Archaeal methane formation from methylamines is initiated by distinct methyltransferases with specificity for monomethylamine, dimethylamine, or trimethylamine. Each methylamine methyltransferase methylates a cognate corrinoid protein, which is subsequently demethylated by a second methyltransferase to form methyl-coenzyme M, the direct methane precursor. Methylation of the corrinoid protein requires reduction of the central cobalt to the highly reducing and nucleophilic Co(I) state. RamA, a 60-kDa monomeric iron-sulfur protein, was isolated from Methanosarcina barkeri and is required for in vitro ATP-dependent reductive activation of methylamine:CoM methyl transfer from all three methylamines. In the absence of the methyltransferases, highly purified RamA was shown to mediate the ATP-dependent reductive activation of Co(II) corrinoid to the Co(I) state for the monomethylamine corrinoid protein, MtmC. The ramA gene is located near a cluster of genes required for monomethylamine methyltransferase activity, including MtbA, the methylamine-specific CoM methylase and the pyl operon required for co-translational insertion of pyrrolysine into the active site of methylamine methyltransferases. RamA possesses a C-terminal ferredoxin-like domain capable of binding two tetranuclear iron-sulfur proteins. Mutliple ramA homologs were identified in genomes of methanogenic Archaea, often encoded near methyltrophic methyltransferase genes. RamA homologs are also encoded in a diverse selection of bacterial genomes, often located near genes for corrinoid-dependent methyltransferases. These results suggest that RamA mediates reductive activation of corrinoid proteins and that it is the first functional archetype of COG3894, a family of redox proteins of unknown function.</description><subject>Adenosine Triphosphate - metabolism</subject><subject>Archaea</subject><subject>Archaeal Proteins - genetics</subject><subject>Archaeal Proteins - isolation & purification</subject><subject>Archaeal Proteins - metabolism</subject><subject>Corrinoids - metabolism</subject><subject>Enzyme Activation</subject><subject>Enzyme Catalysis and Regulation</subject><subject>Ferredoxins - genetics</subject><subject>Ferredoxins - metabolism</subject><subject>Genome, Archaeal - genetics</subject><subject>Methanosarcina barkeri</subject><subject>Methanosarcina barkeri - metabolism</subject><subject>Methylation</subject><subject>Methyltransferases - metabolism</subject><subject>Time Factors</subject><issn>0021-9258</issn><issn>1083-351X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNqFkUtv1DAURiMEotPCliVELFiRwY84sTeVRiNeUitQoRI7y7GvJ64Se2ong_oP-rPxaEYUFghvrq17_PlapyheYLTEqK3f3XR6eclRSwUhCD0qFhhxWlGGfzwuFggRXAnC-ElxmtINyqsW-GlxggWqKaqbRXF_pcbV21KVX2OYwPnyCm5nF8GUNsR8MLOe3A7K1b6oyQVfBluuQ4zOB2cqA1vwBvxUXsLU3w1qdB6O-ykqnyxElSAnKb2_ncr8xr6tfNiAd7pcRd0rUM-KJ1YNCZ4f61lx_eH99_Wn6uLLx8_r1UWlGRZTZYWhjUCNsJQirTBhSlvLmNbMtG3TsMa2TNWsq4FzAW0-kRaMMNrUQDtMz4rzQ-527kYwOo8e1SC30Y0q3smgnPy7410vN2EnSUMEEjQHvDkGxHA7Q5rk6JKGYVAewpxk03Ai6mzkfyDBKGsgPIPLA6hjSCmC_T0NRnJvWWbL8sFyvvDyzz884EetGXh9AHq36X9mnbJzQfcwSsJrWUtCOMvQqwNkVZBqE12S198IwhRhxnHT7t_hBwKykJ2DKJN24DWYHKknaYL714i_ACrRziE</recordid><startdate>20090123</startdate><enddate>20090123</enddate><creator>Ferguson, Tsuneo</creator><creator>Soares, Jitesh A.</creator><creator>Lienard, Tanja</creator><creator>Gottschalk, Gerhard</creator><creator>Krzycki, Joseph A.</creator><general>Elsevier Inc</general><general>American Society for Biochemistry and Molecular Biology</general><scope>6I.</scope><scope>AAFTH</scope><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20090123</creationdate><title>RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea</title><author>Ferguson, Tsuneo ; Soares, Jitesh A. ; Lienard, Tanja ; Gottschalk, Gerhard ; Krzycki, Joseph A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c519t-f9d369069f330ca125acff55cc5d776656f75a45b4e889e7f7527ed9dcd4e3b13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Adenosine Triphosphate - metabolism</topic><topic>Archaea</topic><topic>Archaeal Proteins - genetics</topic><topic>Archaeal Proteins - isolation & purification</topic><topic>Archaeal Proteins - metabolism</topic><topic>Corrinoids - metabolism</topic><topic>Enzyme Activation</topic><topic>Enzyme Catalysis and Regulation</topic><topic>Ferredoxins - genetics</topic><topic>Ferredoxins - metabolism</topic><topic>Genome, Archaeal - genetics</topic><topic>Methanosarcina barkeri</topic><topic>Methanosarcina barkeri - metabolism</topic><topic>Methylation</topic><topic>Methyltransferases - metabolism</topic><topic>Time Factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ferguson, Tsuneo</creatorcontrib><creatorcontrib>Soares, Jitesh A.</creatorcontrib><creatorcontrib>Lienard, Tanja</creatorcontrib><creatorcontrib>Gottschalk, Gerhard</creatorcontrib><creatorcontrib>Krzycki, Joseph A.</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>The Journal of biological chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ferguson, Tsuneo</au><au>Soares, Jitesh A.</au><au>Lienard, Tanja</au><au>Gottschalk, Gerhard</au><au>Krzycki, Joseph A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea</atitle><jtitle>The Journal of biological chemistry</jtitle><addtitle>J Biol Chem</addtitle><date>2009-01-23</date><risdate>2009</risdate><volume>284</volume><issue>4</issue><spage>2285</spage><epage>2295</epage><pages>2285-2295</pages><issn>0021-9258</issn><eissn>1083-351X</eissn><abstract>Archaeal methane formation from methylamines is initiated by distinct methyltransferases with specificity for monomethylamine, dimethylamine, or trimethylamine. Each methylamine methyltransferase methylates a cognate corrinoid protein, which is subsequently demethylated by a second methyltransferase to form methyl-coenzyme M, the direct methane precursor. Methylation of the corrinoid protein requires reduction of the central cobalt to the highly reducing and nucleophilic Co(I) state. RamA, a 60-kDa monomeric iron-sulfur protein, was isolated from Methanosarcina barkeri and is required for in vitro ATP-dependent reductive activation of methylamine:CoM methyl transfer from all three methylamines. In the absence of the methyltransferases, highly purified RamA was shown to mediate the ATP-dependent reductive activation of Co(II) corrinoid to the Co(I) state for the monomethylamine corrinoid protein, MtmC. The ramA gene is located near a cluster of genes required for monomethylamine methyltransferase activity, including MtbA, the methylamine-specific CoM methylase and the pyl operon required for co-translational insertion of pyrrolysine into the active site of methylamine methyltransferases. RamA possesses a C-terminal ferredoxin-like domain capable of binding two tetranuclear iron-sulfur proteins. Mutliple ramA homologs were identified in genomes of methanogenic Archaea, often encoded near methyltrophic methyltransferase genes. RamA homologs are also encoded in a diverse selection of bacterial genomes, often located near genes for corrinoid-dependent methyltransferases. 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subjects | Adenosine Triphosphate - metabolism Archaea Archaeal Proteins - genetics Archaeal Proteins - isolation & purification Archaeal Proteins - metabolism Corrinoids - metabolism Enzyme Activation Enzyme Catalysis and Regulation Ferredoxins - genetics Ferredoxins - metabolism Genome, Archaeal - genetics Methanosarcina barkeri Methanosarcina barkeri - metabolism Methylation Methyltransferases - metabolism Time Factors |
title | RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea |
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