DNA damage alters DNA polymerase δ to a form that exhibits increased discrimination against modified template bases and mismatched primers

• Published in: Nucleic acids research 2009-02, Vol.37 (2), p.647-657
• Main Authors: Meng, Xiao, Zhou, Yajing, Zhang, Sufang, Lee, Ernest Y.C, Frick, David N, Lee, Marietta Y.W.T
• Format: Article
• Language: English
• Subjects: Base Pair Mismatch; DNA - biosynthesis; DNA Damage; DNA Polymerase III - genetics; DNA Polymerase III - metabolism; DNA Primers; Exodeoxyribonucleases - genetics; Exodeoxyribonucleases - metabolism; Genome Integrity, Repair and; HeLa Cells; Humans; Mutation; Nucleotides - metabolism; Protein Subunits - metabolism; Pyrimidine Dimers - chemistry; Recombinant Proteins - metabolism; Templates, Genetic; Ultraviolet Rays
• ISSN: 0305-1048; 1362-4962
• DOI: 10.1093/nar/gkn1000

Human DNA polymerase δ (Pol δ4), a key enzyme in chromosomal replication, is a heterotetramer composed of the p125, p50, p68 and p12 subunits. Genotoxic agents such as UV and alkylating chemicals trigger a DNA damage response in which Pol δ4 is converted to a trimer (Pol δ3) by degradation of p12. We show that Pol δ3 has altered enzymatic properties: it is less able to perform translesion synthesis on templates containing base lesions (O6-MeG, 8-oxoG, an abasic site or a thymine-thymine dimer); a greater proofreading activity; an increased exonuclease/polymerase activity ratio; a decreased tendency for the insertion of wrong nucleotides, and for the extension of mismatched primers. Overall, our findings indicate that Pol δ3 exhibits an enhanced ability for the detection of errors in both primers and templates over its parent enzyme. These alterations in Pol δ3 show that p12 plays a major role in Pol δ4 catalytic functions, and provides significant insights into the rationale for the conversion of Pol δ4 to Pol δ3 in the cellular response to DNA damage.