New approaches to eliminating common-noise artifacts in recordings from intracortical microelectrode arrays: Inter-electrode correlation and virtual referencing

• Published in: Journal of neuroscience methods 2009-06, Vol.181 (1), p.27-35
• Main Authors: Paralikar, Kunal J., Rao, Chinmay R., Clement, Ryan S.
• Format: Article
• Language: English
• Subjects: Action Potentials - physiology; Animals; Cerebral Cortex - cytology; Common average referencing; Common-noise; Inter-electrode correlation; Microelectrodes; Multi-unit recording; Neurons - physiology; Rats; Reference Values; Reproducibility of Results; Signal Processing, Computer-Assisted; Spike-detection; Statistics as Topic; User-Computer Interface
• ISSN: 0165-0270; 1872-678X
• DOI: 10.1016/j.jneumeth.2009.04.014

Intracortical microelectrode arrays record multi-unit extracellular activity for neurophysiology studies and for brain–machine interface applications. The common first step is neural spike-detection; a process complicated by common-noise signals from motion artifacts, electromyographic activity, and electric field pickup, especially in awake/behaving subjects. Often common-noise spikes are very similar to neural spikes in their magnitude, spectral, and temporal features. Provided sufficient spacing exists between electrodes of the array, a local neural spike is rarely recorded on multiple electrodes simultaneously. This is not true for distant common-noise sources. Two new techniques compatible with standard spike-detection schemes are introduced and evaluated. The first method, virtual referencing (VR), takes the average recording from all functional electrodes in the array (represents the signal from a virtual-electrode at the array's center) and subtracts it from the test electrode signal. The second method, inter-electrode correlation (IEC), computes a correlation coefficient between threshold exceeding candidate spike segments on the test electrode and concurrent segments from remaining electrodes. When sufficient correlation is detected, the candidate spike is rejected as originating from a distant common-noise source. The performance of these algorithms was compared with standard thresholding and differential referencing approaches using neural recordings from un-anaesthetized rats. By evaluating characteristics of mean-spike waveforms generated by each method under different levels of common-noise, it was found that IEC consistently offered the most robust means of neural spike-detection. Furthermore, IEC's rejection of supra-threshold events not likely originating from local neurons significantly reduces data handling for downstream spike sorting and processing operations.