Slowing Down Downhill Folding: A Three-Probe Study

• Published in: Biophysical journal 2009-07, Vol.97 (1), p.295-302
• Main Authors: Kim, Seung Joong, Matsumura, Yoshitaka, Dumont, Charles, Kihara, Hiroshi, Gruebele, Martin
• Format: Article
• Language: English
• Subjects: BASIC BIOLOGICAL SCIENCES; Biophysics; Circular Dichroism; CRYOGENICS; DICHROISM; EXTRAPOLATION; FLUORESCENCE; GENERAL AND MISCELLANEOUS//MATHEMATICS, COMPUTING, AND INFORMATION SCIENCE; Guanidine - chemistry; KINETICS; Models, Molecular; MORPHOLOGY; MUTANTS; Mutation; NMR; Nuclear magnetic resonance; PHASE STUDIES; PROBES; Protein; Protein Folding; Protein Structure, Secondary; Repressor Proteins - chemistry; Repressor Proteins - genetics; Repressor Proteins - metabolism; Scattering, Radiation; SMALL ANGLE SCATTERING; SOLVENTS; Temperature; Time Factors; TRYPTOPHAN; Viral Regulatory and Accessory Proteins - chemistry; Viral Regulatory and Accessory Proteins - genetics; Viral Regulatory and Accessory Proteins - metabolism; X-Rays
• ISSN: 0006-3495; 1542-0086
• DOI: 10.1016/j.bpj.2009.04.041

The mutant Tyr22Trp/Glu33Tyr/Gly46Ala/Gly48Ala of λ repressor fragment λ6−85 was previously assigned as an incipient downhill folder. We slow down its folding in a cryogenic water-ethylene-glycol solvent (−18 to −28°C). The refolding kinetics are probed by small-angle x-ray scattering, circular dichroism, and fluorescence to measure the radius of gyration, the average secondary structure content, and the native packing around the single tryptophan residue. The main resolved kinetic phase of the mutant is probe independent and faster than the main phase observed for the pseudo-wild-type. Excess helical structure formed early on by the mutant may reduce the formation of turns and prevent the formation of compact misfolded states, speeding up the overall folding process. Extrapolation of our main cryogenic folding phase and previous T-jump measurements to 37°C yields nearly the same refolding rate as extrapolated by Oas and co-workers from NMR line-shape data. Taken together, all the data consistently indicate a folding speed limit of ∼4.5 μs for this fast folder.