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Association between CCND1 G/A870 Polymorphism, Allele-Specific Amplification, Cyclin D1 Expression, and Survival in Esophageal and Lung Carcinoma

Purpose: Cyclin D1 is found on 11q13, which is a region frequently amplified in several tumor types. The CCND1 locus gives rise to at least two protein isoforms of D1 (D1a and D1b). A common G/A polymorphism (G/A870) is thought to influence the expression levels of D1a and D1b. D1b has been suggeste...

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Published in:Clinical cancer research 2008-12, Vol.14 (23), p.7804-7812
Main Authors: Gupta, Vanita K, Feber, Andrew, Xi, Liqiang, Pennathur, Arjun, Wu, Maoxin, Luketich, James D, Godfrey, Tony E
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container_issue 23
container_start_page 7804
container_title Clinical cancer research
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creator Gupta, Vanita K
Feber, Andrew
Xi, Liqiang
Pennathur, Arjun
Wu, Maoxin
Luketich, James D
Godfrey, Tony E
description Purpose: Cyclin D1 is found on 11q13, which is a region frequently amplified in several tumor types. The CCND1 locus gives rise to at least two protein isoforms of D1 (D1a and D1b). A common G/A polymorphism (G/A870) is thought to influence the expression levels of D1a and D1b. D1b has been suggested to be increased in the presence of the A allele and more oncogenic than D1a. Furthermore, the A allele has been reported to correlate with increased risk of carcinoma in several tumor types, suggesting that this polymorphism and D1b are important in tumor progression. However, contradictory data about the polymorphism, D1 variant expression, and correlation with survival have been reported. We explored the relationship between gene amplification, G/A870 genotype, D1a and D1b expression, and overall survival in esophageal adenocarcinoma and non–small cell lung cancer. Experimental Design: DNA and RNA were isolated from 54 esophageal adenocarcinoma samples and 89 non–small cell lung cancer samples and were analyzed for gene amplification, genotype at the polymorphism, gene expression, and association with overall survival. Results: The D1 variant expression did not correlate with amplification, genotype, or overall survival in either tumor type. The total D1 expression correlated with decreased patient survival. Several other genes on 11q13 also seem to be overexpressed and correlated with decreased survival. Conclusions: We report that the G/A870 polymorphism does not correlate with patient survival, or with D1a or D1b expression. However, the total D1 expression and the expression of several other genes on 11q13 seem to be associated with esophageal adenocarcinoma patient survival.
doi_str_mv 10.1158/1078-0432.CCR-08-0744
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The CCND1 locus gives rise to at least two protein isoforms of D1 (D1a and D1b). A common G/A polymorphism (G/A870) is thought to influence the expression levels of D1a and D1b. D1b has been suggested to be increased in the presence of the A allele and more oncogenic than D1a. Furthermore, the A allele has been reported to correlate with increased risk of carcinoma in several tumor types, suggesting that this polymorphism and D1b are important in tumor progression. However, contradictory data about the polymorphism, D1 variant expression, and correlation with survival have been reported. We explored the relationship between gene amplification, G/A870 genotype, D1a and D1b expression, and overall survival in esophageal adenocarcinoma and non–small cell lung cancer. Experimental Design: DNA and RNA were isolated from 54 esophageal adenocarcinoma samples and 89 non–small cell lung cancer samples and were analyzed for gene amplification, genotype at the polymorphism, gene expression, and association with overall survival. Results: The D1 variant expression did not correlate with amplification, genotype, or overall survival in either tumor type. The total D1 expression correlated with decreased patient survival. Several other genes on 11q13 also seem to be overexpressed and correlated with decreased survival. Conclusions: We report that the G/A870 polymorphism does not correlate with patient survival, or with D1a or D1b expression. However, the total D1 expression and the expression of several other genes on 11q13 seem to be associated with esophageal adenocarcinoma patient survival.</description><identifier>ISSN: 1078-0432</identifier><identifier>EISSN: 1557-3265</identifier><identifier>DOI: 10.1158/1078-0432.CCR-08-0744</identifier><identifier>PMID: 19047108</identifier><identifier>CODEN: CCREF4</identifier><language>eng</language><publisher>Philadelphia, PA: American Association for Cancer Research</publisher><subject>Adenocarcinoma - genetics ; Adenocarcinoma - mortality ; Adult ; Aged ; Aged, 80 and over ; Alleles ; Antineoplastic agents ; Biological and medical sciences ; Carcinoma, Non-Small-Cell Lung - genetics ; Carcinoma, Non-Small-Cell Lung - mortality ; CCND1 ; cyclin D1 ; Cyclin D1 - genetics ; Cyclin D1 - metabolism ; esophageal adenocarcinoma ; Esophageal Neoplasms - genetics ; Esophageal Neoplasms - mortality ; Esophagus ; Female ; Gastroenterology. Liver. Pancreas. Abdomen ; Gene Amplification ; Gene Expression ; Genotype ; Humans ; Kaplan-Meier Estimate ; Lung Neoplasms - genetics ; Lung Neoplasms - mortality ; Male ; Medical sciences ; Middle Aged ; NSCLC ; Pharmacology. Drug treatments ; Pneumology ; Polymorphism, Restriction Fragment Length ; Polymorphism, Single Nucleotide ; Protein Isoforms - genetics ; Protein Isoforms - metabolism ; Reverse Transcriptase Polymerase Chain Reaction ; Tumors ; Tumors of the respiratory system and mediastinum</subject><ispartof>Clinical cancer research, 2008-12, Vol.14 (23), p.7804-7812</ispartof><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c403t-8aac5e822c57e281bfc572d057d33f06f62e69fe0dd8f33c6e7934c0064acfc83</citedby><cites>FETCH-LOGICAL-c403t-8aac5e822c57e281bfc572d057d33f06f62e69fe0dd8f33c6e7934c0064acfc83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=21172325$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19047108$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gupta, Vanita K</creatorcontrib><creatorcontrib>Feber, Andrew</creatorcontrib><creatorcontrib>Xi, Liqiang</creatorcontrib><creatorcontrib>Pennathur, Arjun</creatorcontrib><creatorcontrib>Wu, Maoxin</creatorcontrib><creatorcontrib>Luketich, James D</creatorcontrib><creatorcontrib>Godfrey, Tony E</creatorcontrib><title>Association between CCND1 G/A870 Polymorphism, Allele-Specific Amplification, Cyclin D1 Expression, and Survival in Esophageal and Lung Carcinoma</title><title>Clinical cancer research</title><addtitle>Clin Cancer Res</addtitle><description>Purpose: Cyclin D1 is found on 11q13, which is a region frequently amplified in several tumor types. The CCND1 locus gives rise to at least two protein isoforms of D1 (D1a and D1b). A common G/A polymorphism (G/A870) is thought to influence the expression levels of D1a and D1b. D1b has been suggested to be increased in the presence of the A allele and more oncogenic than D1a. Furthermore, the A allele has been reported to correlate with increased risk of carcinoma in several tumor types, suggesting that this polymorphism and D1b are important in tumor progression. However, contradictory data about the polymorphism, D1 variant expression, and correlation with survival have been reported. We explored the relationship between gene amplification, G/A870 genotype, D1a and D1b expression, and overall survival in esophageal adenocarcinoma and non–small cell lung cancer. Experimental Design: DNA and RNA were isolated from 54 esophageal adenocarcinoma samples and 89 non–small cell lung cancer samples and were analyzed for gene amplification, genotype at the polymorphism, gene expression, and association with overall survival. Results: The D1 variant expression did not correlate with amplification, genotype, or overall survival in either tumor type. The total D1 expression correlated with decreased patient survival. Several other genes on 11q13 also seem to be overexpressed and correlated with decreased survival. Conclusions: We report that the G/A870 polymorphism does not correlate with patient survival, or with D1a or D1b expression. However, the total D1 expression and the expression of several other genes on 11q13 seem to be associated with esophageal adenocarcinoma patient survival.</description><subject>Adenocarcinoma - genetics</subject><subject>Adenocarcinoma - mortality</subject><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Alleles</subject><subject>Antineoplastic agents</subject><subject>Biological and medical sciences</subject><subject>Carcinoma, Non-Small-Cell Lung - genetics</subject><subject>Carcinoma, Non-Small-Cell Lung - mortality</subject><subject>CCND1</subject><subject>cyclin D1</subject><subject>Cyclin D1 - genetics</subject><subject>Cyclin D1 - metabolism</subject><subject>esophageal adenocarcinoma</subject><subject>Esophageal Neoplasms - genetics</subject><subject>Esophageal Neoplasms - mortality</subject><subject>Esophagus</subject><subject>Female</subject><subject>Gastroenterology. Liver. Pancreas. Abdomen</subject><subject>Gene Amplification</subject><subject>Gene Expression</subject><subject>Genotype</subject><subject>Humans</subject><subject>Kaplan-Meier Estimate</subject><subject>Lung Neoplasms - genetics</subject><subject>Lung Neoplasms - mortality</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Middle Aged</subject><subject>NSCLC</subject><subject>Pharmacology. Drug treatments</subject><subject>Pneumology</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Protein Isoforms - genetics</subject><subject>Protein Isoforms - metabolism</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Tumors</subject><subject>Tumors of the respiratory system and mediastinum</subject><issn>1078-0432</issn><issn>1557-3265</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNpVUdtuEzEUXCEQLYVPAPmFB6Ru6-vaeUFaLaEgRYAoPFuO9zhr5L3ITlLyGfwx3iYUePLYZ2Z8NFMULwm-IkSoa4KlKjFn9KppvpY4Y8n5o-KcCCFLRivxOOM_nLPiWUo_MCacYP60OCMLzCXB6rz4Vac0Wm-2fhzQGrZ3AANqmk_vCLq5rpXE6MsYDv0Yp86n_hLVIUCA8nYC6523qO6nMIN7g0vUHGzwA8rq5c8pQkr3r2Zo0e0u7v3eBJTHyzROndlAvs2j1W7YoMZE64exN8-LJ86EBC9O50Xx_f3yW_OhXH2--djUq9JyzLalMsYKUJRaIYEqsnYZ0BYL2TLmcOUqCtXCAW5b5RizFcgF4xbjihvrrGIXxduj77Rb99BaGLbRBD1F35t40KPx-v_J4Du9GfeaSsoWYpENxNHAxjGlCO5BS7CeO9Jz_nrOX-eONM44d5R1r_79-K_qVEomvD4RTLImuGgG69MDjxKSN6Ai894ceZ3fdHc-graZCTHnDjnNThOuKdNS5RV-A2rRqkk</recordid><startdate>20081201</startdate><enddate>20081201</enddate><creator>Gupta, Vanita K</creator><creator>Feber, Andrew</creator><creator>Xi, Liqiang</creator><creator>Pennathur, Arjun</creator><creator>Wu, Maoxin</creator><creator>Luketich, James D</creator><creator>Godfrey, Tony E</creator><general>American Association for Cancer Research</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>20081201</creationdate><title>Association between CCND1 G/A870 Polymorphism, Allele-Specific Amplification, Cyclin D1 Expression, and Survival in Esophageal and Lung Carcinoma</title><author>Gupta, Vanita K ; Feber, Andrew ; Xi, Liqiang ; Pennathur, Arjun ; Wu, Maoxin ; Luketich, James D ; Godfrey, Tony E</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c403t-8aac5e822c57e281bfc572d057d33f06f62e69fe0dd8f33c6e7934c0064acfc83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Adenocarcinoma - genetics</topic><topic>Adenocarcinoma - mortality</topic><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Alleles</topic><topic>Antineoplastic agents</topic><topic>Biological and medical sciences</topic><topic>Carcinoma, Non-Small-Cell Lung - genetics</topic><topic>Carcinoma, Non-Small-Cell Lung - mortality</topic><topic>CCND1</topic><topic>cyclin D1</topic><topic>Cyclin D1 - genetics</topic><topic>Cyclin D1 - metabolism</topic><topic>esophageal adenocarcinoma</topic><topic>Esophageal Neoplasms - genetics</topic><topic>Esophageal Neoplasms - mortality</topic><topic>Esophagus</topic><topic>Female</topic><topic>Gastroenterology. Liver. Pancreas. Abdomen</topic><topic>Gene Amplification</topic><topic>Gene Expression</topic><topic>Genotype</topic><topic>Humans</topic><topic>Kaplan-Meier Estimate</topic><topic>Lung Neoplasms - genetics</topic><topic>Lung Neoplasms - mortality</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Middle Aged</topic><topic>NSCLC</topic><topic>Pharmacology. Drug treatments</topic><topic>Pneumology</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Protein Isoforms - genetics</topic><topic>Protein Isoforms - metabolism</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>Tumors</topic><topic>Tumors of the respiratory system and mediastinum</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gupta, Vanita K</creatorcontrib><creatorcontrib>Feber, Andrew</creatorcontrib><creatorcontrib>Xi, Liqiang</creatorcontrib><creatorcontrib>Pennathur, Arjun</creatorcontrib><creatorcontrib>Wu, Maoxin</creatorcontrib><creatorcontrib>Luketich, James D</creatorcontrib><creatorcontrib>Godfrey, Tony E</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Clinical cancer research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gupta, Vanita K</au><au>Feber, Andrew</au><au>Xi, Liqiang</au><au>Pennathur, Arjun</au><au>Wu, Maoxin</au><au>Luketich, James D</au><au>Godfrey, Tony E</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Association between CCND1 G/A870 Polymorphism, Allele-Specific Amplification, Cyclin D1 Expression, and Survival in Esophageal and Lung Carcinoma</atitle><jtitle>Clinical cancer research</jtitle><addtitle>Clin Cancer Res</addtitle><date>2008-12-01</date><risdate>2008</risdate><volume>14</volume><issue>23</issue><spage>7804</spage><epage>7812</epage><pages>7804-7812</pages><issn>1078-0432</issn><eissn>1557-3265</eissn><coden>CCREF4</coden><abstract>Purpose: Cyclin D1 is found on 11q13, which is a region frequently amplified in several tumor types. The CCND1 locus gives rise to at least two protein isoforms of D1 (D1a and D1b). A common G/A polymorphism (G/A870) is thought to influence the expression levels of D1a and D1b. D1b has been suggested to be increased in the presence of the A allele and more oncogenic than D1a. Furthermore, the A allele has been reported to correlate with increased risk of carcinoma in several tumor types, suggesting that this polymorphism and D1b are important in tumor progression. However, contradictory data about the polymorphism, D1 variant expression, and correlation with survival have been reported. We explored the relationship between gene amplification, G/A870 genotype, D1a and D1b expression, and overall survival in esophageal adenocarcinoma and non–small cell lung cancer. Experimental Design: DNA and RNA were isolated from 54 esophageal adenocarcinoma samples and 89 non–small cell lung cancer samples and were analyzed for gene amplification, genotype at the polymorphism, gene expression, and association with overall survival. Results: The D1 variant expression did not correlate with amplification, genotype, or overall survival in either tumor type. The total D1 expression correlated with decreased patient survival. Several other genes on 11q13 also seem to be overexpressed and correlated with decreased survival. Conclusions: We report that the G/A870 polymorphism does not correlate with patient survival, or with D1a or D1b expression. However, the total D1 expression and the expression of several other genes on 11q13 seem to be associated with esophageal adenocarcinoma patient survival.</abstract><cop>Philadelphia, PA</cop><pub>American Association for Cancer Research</pub><pmid>19047108</pmid><doi>10.1158/1078-0432.CCR-08-0744</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
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ispartof Clinical cancer research, 2008-12, Vol.14 (23), p.7804-7812
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subjects Adenocarcinoma - genetics
Adenocarcinoma - mortality
Adult
Aged
Aged, 80 and over
Alleles
Antineoplastic agents
Biological and medical sciences
Carcinoma, Non-Small-Cell Lung - genetics
Carcinoma, Non-Small-Cell Lung - mortality
CCND1
cyclin D1
Cyclin D1 - genetics
Cyclin D1 - metabolism
esophageal adenocarcinoma
Esophageal Neoplasms - genetics
Esophageal Neoplasms - mortality
Esophagus
Female
Gastroenterology. Liver. Pancreas. Abdomen
Gene Amplification
Gene Expression
Genotype
Humans
Kaplan-Meier Estimate
Lung Neoplasms - genetics
Lung Neoplasms - mortality
Male
Medical sciences
Middle Aged
NSCLC
Pharmacology. Drug treatments
Pneumology
Polymorphism, Restriction Fragment Length
Polymorphism, Single Nucleotide
Protein Isoforms - genetics
Protein Isoforms - metabolism
Reverse Transcriptase Polymerase Chain Reaction
Tumors
Tumors of the respiratory system and mediastinum
title Association between CCND1 G/A870 Polymorphism, Allele-Specific Amplification, Cyclin D1 Expression, and Survival in Esophageal and Lung Carcinoma
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