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Cloning, expression, crystallization and preliminary X-ray crystallographic analysis of leucine aminopeptidase (LAP) from the pepA gene of Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae (Xoo) causes the serious disease bacterial blight in rice. The pepA (Xoo0834) gene from Xoo is one of around 100 genes that have been selected for the design of antibacterial drugs. The pepA gene encodes leucine aminopeptidase (LAP), an exopeptidase that catalyzes the h...
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Published in: | Acta crystallographica. Section F, Structural biology and crystallization communications Structural biology and crystallization communications, 2009-09, Vol.65 (9), p.952-955 |
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container_title | Acta crystallographica. Section F, Structural biology and crystallization communications |
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description | Xanthomonas oryzae pv. oryzae (Xoo) causes the serious disease bacterial blight in rice. The pepA (Xoo0834) gene from Xoo is one of around 100 genes that have been selected for the design of antibacterial drugs. The pepA gene encodes leucine aminopeptidase (LAP), an exopeptidase that catalyzes the hydrolysis of leucine residues from the N‐terminus of a protein or peptide. This enzyme was expressed in Escherichia coli, purified and crystallized, and preliminary X‐ray structural studies have been carried out. The LAP crystal diffracted to 2.6 Å resolution and belonged to the cubic space group P213. The unit‐cell volume of the crystal was compatible with the presence of two monomers in the asymmetric unit. |
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The pepA (Xoo0834) gene from Xoo is one of around 100 genes that have been selected for the design of antibacterial drugs. The pepA gene encodes leucine aminopeptidase (LAP), an exopeptidase that catalyzes the hydrolysis of leucine residues from the N‐terminus of a protein or peptide. This enzyme was expressed in Escherichia coli, purified and crystallized, and preliminary X‐ray structural studies have been carried out. The LAP crystal diffracted to 2.6 Å resolution and belonged to the cubic space group P213. The unit‐cell volume of the crystal was compatible with the presence of two monomers in the asymmetric unit.</description><identifier>ISSN: 1744-3091</identifier><identifier>EISSN: 1744-3091</identifier><identifier>DOI: 10.1107/S1744309109031467</identifier><identifier>PMID: 19724142</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Amino Acid Sequence ; Cloning, Molecular ; Crystallization ; Crystallization Communications ; Crystallography, X-Ray ; Electrophoresis, Polyacrylamide Gel ; Escherichia coli ; Genes, Bacterial ; leucine aminopeptidase ; Leucyl Aminopeptidase - chemistry ; Molecular Sequence Data ; Oryza sativa ; Sequence Alignment ; Xanthomonas - enzymology ; Xanthomonas - genetics ; Xanthomonas oryzae ; Xanthomonas oryzae pv. oryzae</subject><ispartof>Acta crystallographica. Section F, Structural biology and crystallization communications, 2009-09, Vol.65 (9), p.952-955</ispartof><rights>International Union of Crystallography, 2009</rights><rights>International Union of Crystallography 2009 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4740-597201cfa93706abfe90941b0aec5eb1d912c026ead9749e9086cf906c246c103</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795610/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795610/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27922,27923,53789,53791</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19724142$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Huynh, Kim-Hung</creatorcontrib><creatorcontrib>Natarajan, Sampath</creatorcontrib><creatorcontrib>Choi, Jeongyoon</creatorcontrib><creatorcontrib>Song, Na-Hyun</creatorcontrib><creatorcontrib>Kim, Jeong-Gu</creatorcontrib><creatorcontrib>Lee, Byoung-Moo</creatorcontrib><creatorcontrib>Ahn, Yeh-Jin</creatorcontrib><creatorcontrib>Kang, Lin-Woo</creatorcontrib><title>Cloning, expression, crystallization and preliminary X-ray crystallographic analysis of leucine aminopeptidase (LAP) from the pepA gene of Xanthomonas oryzae pv. oryzae</title><title>Acta crystallographica. Section F, Structural biology and crystallization communications</title><addtitle>Acta Cryst. F</addtitle><description>Xanthomonas oryzae pv. oryzae (Xoo) causes the serious disease bacterial blight in rice. The pepA (Xoo0834) gene from Xoo is one of around 100 genes that have been selected for the design of antibacterial drugs. The pepA gene encodes leucine aminopeptidase (LAP), an exopeptidase that catalyzes the hydrolysis of leucine residues from the N‐terminus of a protein or peptide. This enzyme was expressed in Escherichia coli, purified and crystallized, and preliminary X‐ray structural studies have been carried out. The LAP crystal diffracted to 2.6 Å resolution and belonged to the cubic space group P213. The unit‐cell volume of the crystal was compatible with the presence of two monomers in the asymmetric unit.</description><subject>Amino Acid Sequence</subject><subject>Cloning, Molecular</subject><subject>Crystallization</subject><subject>Crystallization Communications</subject><subject>Crystallography, X-Ray</subject><subject>Electrophoresis, Polyacrylamide Gel</subject><subject>Escherichia coli</subject><subject>Genes, Bacterial</subject><subject>leucine aminopeptidase</subject><subject>Leucyl Aminopeptidase - chemistry</subject><subject>Molecular Sequence Data</subject><subject>Oryza sativa</subject><subject>Sequence Alignment</subject><subject>Xanthomonas - enzymology</subject><subject>Xanthomonas - genetics</subject><subject>Xanthomonas oryzae</subject><subject>Xanthomonas oryzae pv. oryzae</subject><issn>1744-3091</issn><issn>1744-3091</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNqFkt1uEzEQhVeIipbCA3CDfMWP1C322ruOb5BCRAoiBQRFKVfWxPEmBq-92Ju22yfiMXGaKBQhwZVHc75zPCM7yx4RfEwI5i8-E84YxYJggSlhFb-THaxb-bp391a9n92P8RvGlIpqcC_bJ4IXjLDiIPs5st4ZtzhC-qoNOkbj3RFSoY8dWGuuoUsNBG6OkmpNYxyEHp3nAfod5RcB2qVRCQPbRxORr5HVK2WcRpAsvtVtZ-YQNXo2GX58jurgG9QtNUrCEC104pLlHFy39I13kBJCfw1Jvzjelg-yvRps1A-352H2Zfz6bPQmn3w4eTsaTnLFOMN5mTbDRNUgKMcVzGotsGBkhkGrUs_IXJBC4aLSMBeciaQOKlULXKmCVYpgepi93OS2q1mj50q7LoCVbTBN2lx6MPJPxZmlXPgLWXBRVjcBT7cBwf9Y6djJxkSlrQWn_SpKThmmZcXKRD75J1kQPEizkwSSDaiCjzHoejcOwXL9E-RfPyF5Ht_e47dj-_QJEBvg0ljd_z9RDr-Oi1fTkt7smG-8Jnb6aueF8F2mq3kpp-9P5Omnir4bn03lKf0FPEbR_Q</recordid><startdate>200909</startdate><enddate>200909</enddate><creator>Huynh, Kim-Hung</creator><creator>Natarajan, Sampath</creator><creator>Choi, Jeongyoon</creator><creator>Song, Na-Hyun</creator><creator>Kim, Jeong-Gu</creator><creator>Lee, Byoung-Moo</creator><creator>Ahn, Yeh-Jin</creator><creator>Kang, Lin-Woo</creator><general>International Union of Crystallography</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>200909</creationdate><title>Cloning, expression, crystallization and preliminary X-ray crystallographic analysis of leucine aminopeptidase (LAP) from the pepA gene of Xanthomonas oryzae pv. oryzae</title><author>Huynh, Kim-Hung ; Natarajan, Sampath ; Choi, Jeongyoon ; Song, Na-Hyun ; Kim, Jeong-Gu ; Lee, Byoung-Moo ; Ahn, Yeh-Jin ; Kang, Lin-Woo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4740-597201cfa93706abfe90941b0aec5eb1d912c026ead9749e9086cf906c246c103</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Amino Acid Sequence</topic><topic>Cloning, Molecular</topic><topic>Crystallization</topic><topic>Crystallization Communications</topic><topic>Crystallography, X-Ray</topic><topic>Electrophoresis, Polyacrylamide Gel</topic><topic>Escherichia coli</topic><topic>Genes, Bacterial</topic><topic>leucine aminopeptidase</topic><topic>Leucyl Aminopeptidase - chemistry</topic><topic>Molecular Sequence Data</topic><topic>Oryza sativa</topic><topic>Sequence Alignment</topic><topic>Xanthomonas - enzymology</topic><topic>Xanthomonas - genetics</topic><topic>Xanthomonas oryzae</topic><topic>Xanthomonas oryzae pv. oryzae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huynh, Kim-Hung</creatorcontrib><creatorcontrib>Natarajan, Sampath</creatorcontrib><creatorcontrib>Choi, Jeongyoon</creatorcontrib><creatorcontrib>Song, Na-Hyun</creatorcontrib><creatorcontrib>Kim, Jeong-Gu</creatorcontrib><creatorcontrib>Lee, Byoung-Moo</creatorcontrib><creatorcontrib>Ahn, Yeh-Jin</creatorcontrib><creatorcontrib>Kang, Lin-Woo</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. 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F</addtitle><date>2009-09</date><risdate>2009</risdate><volume>65</volume><issue>9</issue><spage>952</spage><epage>955</epage><pages>952-955</pages><issn>1744-3091</issn><eissn>1744-3091</eissn><abstract>Xanthomonas oryzae pv. oryzae (Xoo) causes the serious disease bacterial blight in rice. The pepA (Xoo0834) gene from Xoo is one of around 100 genes that have been selected for the design of antibacterial drugs. The pepA gene encodes leucine aminopeptidase (LAP), an exopeptidase that catalyzes the hydrolysis of leucine residues from the N‐terminus of a protein or peptide. This enzyme was expressed in Escherichia coli, purified and crystallized, and preliminary X‐ray structural studies have been carried out. The LAP crystal diffracted to 2.6 Å resolution and belonged to the cubic space group P213. 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subjects | Amino Acid Sequence Cloning, Molecular Crystallization Crystallization Communications Crystallography, X-Ray Electrophoresis, Polyacrylamide Gel Escherichia coli Genes, Bacterial leucine aminopeptidase Leucyl Aminopeptidase - chemistry Molecular Sequence Data Oryza sativa Sequence Alignment Xanthomonas - enzymology Xanthomonas - genetics Xanthomonas oryzae Xanthomonas oryzae pv. oryzae |
title | Cloning, expression, crystallization and preliminary X-ray crystallographic analysis of leucine aminopeptidase (LAP) from the pepA gene of Xanthomonas oryzae pv. oryzae |
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