ViewDock TDW: high-throughput visualization of virtual screening results

ViewDock TDW is a modification of the pre-existing ViewDock Chimera extension (http://www.cgl.ucsf.edu/chimera/) used to visualize results of virtual screening experiments. By combing TDW hardware and an enhanced ViewDock interface, dozens of ligand–protein complexes are rendered simultaneously to p...

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Bibliographic Details
Published in:Bioinformatics 2010-08, Vol.26 (15), p.1915-1917
Main Authors: Lau, Christopher D., Levesque, Marshall J., Chien, Shu, Date, Susumu, Haga, Jason H.
Format: Article
Language:English
Subjects:
Applications Note
Bioinformatics
Biological and medical sciences
Computational Biology - methods
Computer programs
Contact
Fundamental and applied biological sciences. Psychology
General aspects
Hardware
Internet
Ligands
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Preserves
Proteins - analysis
Screening
Software
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Description
Summary:ViewDock TDW is a modification of the pre-existing ViewDock Chimera extension (http://www.cgl.ucsf.edu/chimera/) used to visualize results of virtual screening experiments. By combing TDW hardware and an enhanced ViewDock interface, dozens of ligand–protein complexes are rendered simultaneously to parallelize the analysis of candidate ligands. The ViewDock TDW GUI allows the user to easily and interactively manipulate the molecules on the TDW as an entire set, a selected subset or a single ligand–protein complex and preserves all Chimera functionality. Availability and Implementation: ViewDock TDW is an open source software; freely available on the web at http://www.tdw-prime.webs.com. Chimera UCSF is also available, free of charge, at http://www.cgl.ucsf.edu/chimera/ Contact: jhaga@bioeng.ucsd.edu
ISSN:1367-4803
1460-2059
1367-4811
DOI:10.1093/bioinformatics/btq296