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A Time Domain Fluorescence Tomography System for Small Animal Imaging
We describe the application of a time domain diffuse fluorescence tomography system for whole body small animal imaging. The key features of the system are the use of point excitation in free space using ultrashort laser pulses and noncontact detection using a gated, intensified charge-coupled devic...
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Published in: | IEEE transactions on medical imaging 2008-08, Vol.27 (8), p.1152-1163 |
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description | We describe the application of a time domain diffuse fluorescence tomography system for whole body small animal imaging. The key features of the system are the use of point excitation in free space using ultrashort laser pulses and noncontact detection using a gated, intensified charge-coupled device (CCD) camera. Mouse shaped epoxy phantoms, with embedded fluorescent inclusions, were used to verify the performance of a recently developed asymptotic lifetime-based tomography algorithm. The asymptotic algorithm is based on a multiexponential analysis of the decay portion of the data. The multiexponential model is shown to enable the use of a global analysis approach for a robust recovery of the lifetime components present within the imaging medium. The surface boundaries of the imaging volume were acquired using a photogrammetric camera integrated with the imaging system, and implemented in a Monte-Carlo model of photon propagation in tissue. The tomography results show that the asymptotic approach is able to separate axially located fluorescent inclusions centered at depths of 4 and 10 mm from the surface of the mouse phantom. The fluorescent inclusions had distinct lifetimes of 0.5 and 0.95 ns. The inclusions were nearly overlapping along the measurement axis and shown to be not resolvable using continuous wave (CW) methods. These results suggest the practical feasibility and advantages of a time domain approach for whole body small animal fluorescence molecular imaging, particularly with the use of lifetime as a contrast mechanism. |
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The key features of the system are the use of point excitation in free space using ultrashort laser pulses and noncontact detection using a gated, intensified charge-coupled device (CCD) camera. Mouse shaped epoxy phantoms, with embedded fluorescent inclusions, were used to verify the performance of a recently developed asymptotic lifetime-based tomography algorithm. The asymptotic algorithm is based on a multiexponential analysis of the decay portion of the data. The multiexponential model is shown to enable the use of a global analysis approach for a robust recovery of the lifetime components present within the imaging medium. The surface boundaries of the imaging volume were acquired using a photogrammetric camera integrated with the imaging system, and implemented in a Monte-Carlo model of photon propagation in tissue. The tomography results show that the asymptotic approach is able to separate axially located fluorescent inclusions centered at depths of 4 and 10 mm from the surface of the mouse phantom. The fluorescent inclusions had distinct lifetimes of 0.5 and 0.95 ns. The inclusions were nearly overlapping along the measurement axis and shown to be not resolvable using continuous wave (CW) methods. These results suggest the practical feasibility and advantages of a time domain approach for whole body small animal fluorescence molecular imaging, particularly with the use of lifetime as a contrast mechanism.</description><identifier>ISSN: 0278-0062</identifier><identifier>EISSN: 1558-254X</identifier><identifier>DOI: 10.1109/TMI.2008.918341</identifier><identifier>PMID: 18672432</identifier><identifier>CODEN: ITMID4</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Animals ; Charge coupled devices ; Charge-coupled image sensors ; Equipment Design ; Equipment Failure Analysis ; Fluorescence ; Fluorescence diffuse optical tomography ; Image Enhancement - instrumentation ; Imaging phantoms ; Laser excitation ; Lifetime ; lifetime-based sensing ; Medical imaging ; Mice ; Microscopy, Fluorescence - instrumentation ; Microscopy, Fluorescence - veterinary ; molecular imaging ; Optical pulses ; Phantoms, Imaging ; Space charge ; Studies ; time-resolved imaging ; Tomography ; Tomography, Optical - instrumentation ; Tomography, Optical - veterinary</subject><ispartof>IEEE transactions on medical imaging, 2008-08, Vol.27 (8), p.1152-1163</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2008</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c501t-d56ec82f400bcbaff546f7763482f184816c0fea71628949e61970446d8a77113</citedby><cites>FETCH-LOGICAL-c501t-d56ec82f400bcbaff546f7763482f184816c0fea71628949e61970446d8a77113</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/4449088$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>230,314,776,780,881,27901,27902,54771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18672432$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kumar, A.T.N.</creatorcontrib><creatorcontrib>Raymond, S.B.</creatorcontrib><creatorcontrib>Dunn, A.K.</creatorcontrib><creatorcontrib>Bacskai, B.J.</creatorcontrib><creatorcontrib>Boas, D.A.</creatorcontrib><title>A Time Domain Fluorescence Tomography System for Small Animal Imaging</title><title>IEEE transactions on medical imaging</title><addtitle>TMI</addtitle><addtitle>IEEE Trans Med Imaging</addtitle><description>We describe the application of a time domain diffuse fluorescence tomography system for whole body small animal imaging. The key features of the system are the use of point excitation in free space using ultrashort laser pulses and noncontact detection using a gated, intensified charge-coupled device (CCD) camera. Mouse shaped epoxy phantoms, with embedded fluorescent inclusions, were used to verify the performance of a recently developed asymptotic lifetime-based tomography algorithm. The asymptotic algorithm is based on a multiexponential analysis of the decay portion of the data. The multiexponential model is shown to enable the use of a global analysis approach for a robust recovery of the lifetime components present within the imaging medium. The surface boundaries of the imaging volume were acquired using a photogrammetric camera integrated with the imaging system, and implemented in a Monte-Carlo model of photon propagation in tissue. The tomography results show that the asymptotic approach is able to separate axially located fluorescent inclusions centered at depths of 4 and 10 mm from the surface of the mouse phantom. The fluorescent inclusions had distinct lifetimes of 0.5 and 0.95 ns. The inclusions were nearly overlapping along the measurement axis and shown to be not resolvable using continuous wave (CW) methods. These results suggest the practical feasibility and advantages of a time domain approach for whole body small animal fluorescence molecular imaging, particularly with the use of lifetime as a contrast mechanism.</description><subject>Animals</subject><subject>Charge coupled devices</subject><subject>Charge-coupled image sensors</subject><subject>Equipment Design</subject><subject>Equipment Failure Analysis</subject><subject>Fluorescence</subject><subject>Fluorescence diffuse optical tomography</subject><subject>Image Enhancement - instrumentation</subject><subject>Imaging phantoms</subject><subject>Laser excitation</subject><subject>Lifetime</subject><subject>lifetime-based sensing</subject><subject>Medical imaging</subject><subject>Mice</subject><subject>Microscopy, Fluorescence - instrumentation</subject><subject>Microscopy, Fluorescence - veterinary</subject><subject>molecular imaging</subject><subject>Optical pulses</subject><subject>Phantoms, Imaging</subject><subject>Space charge</subject><subject>Studies</subject><subject>time-resolved imaging</subject><subject>Tomography</subject><subject>Tomography, Optical - instrumentation</subject><subject>Tomography, Optical - veterinary</subject><issn>0278-0062</issn><issn>1558-254X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqFkc1rGzEQxUVpaNy05x4KReTQntaZ0bcuBZMmjSGlh7jQm5DXWmfD7sqVvAH_95WxST8O7WlA89ObN_MIeYMwRQR7sfgynzIAM7VouMBnZIJSmopJ8f05mQDTpgJQ7JS8zPkBAIUE-4KcolGaCc4m5GpGF20f6KfY-3ag190YU8h1GOpAF7GP6-Q39zt6t8vb0NMmJnrX-66js6Etlc57v26H9Sty0vguh9fHeka-XV8tLm-q26-f55ez26qWgNtqJVWoDWsEwLJe-qaRQjVaKy7KIxphUNXQBK9RMWOFDQqtBiHUynitEfkZ-XjQ3YzLPqyKzW3yndukYibtXPSt-7MztPduHR8dswyQ6yLw4SiQ4o8x5K3r27Jt1_khxDE7o6w0SjFeyPf_JJXlGozB_4JoBTNc2gKe_wU-xDEN5V5lLNPSMrUfe3GA6hRzTqF5Wg7B7SN3JXK3j9wdIi8_3v1-k1_8MeMCvD0AbQjhqS2EsMU__wnRVK3j</recordid><startdate>20080801</startdate><enddate>20080801</enddate><creator>Kumar, A.T.N.</creator><creator>Raymond, S.B.</creator><creator>Dunn, A.K.</creator><creator>Bacskai, B.J.</creator><creator>Boas, D.A.</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. 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instrumentation</topic><topic>Imaging phantoms</topic><topic>Laser excitation</topic><topic>Lifetime</topic><topic>lifetime-based sensing</topic><topic>Medical imaging</topic><topic>Mice</topic><topic>Microscopy, Fluorescence - instrumentation</topic><topic>Microscopy, Fluorescence - veterinary</topic><topic>molecular imaging</topic><topic>Optical pulses</topic><topic>Phantoms, Imaging</topic><topic>Space charge</topic><topic>Studies</topic><topic>time-resolved imaging</topic><topic>Tomography</topic><topic>Tomography, Optical - instrumentation</topic><topic>Tomography, Optical - veterinary</topic><toplevel>online_resources</toplevel><creatorcontrib>Kumar, A.T.N.</creatorcontrib><creatorcontrib>Raymond, S.B.</creatorcontrib><creatorcontrib>Dunn, A.K.</creatorcontrib><creatorcontrib>Bacskai, B.J.</creatorcontrib><creatorcontrib>Boas, D.A.</creatorcontrib><collection>IEEE All-Society Periodicals Package (ASPP) 2005-present</collection><collection>IEEE All-Society Periodicals Package (ASPP) 1998-Present</collection><collection>IEEE Xplore</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts – Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Nursing & Allied Health Premium</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>IEEE transactions on medical imaging</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kumar, A.T.N.</au><au>Raymond, S.B.</au><au>Dunn, A.K.</au><au>Bacskai, B.J.</au><au>Boas, D.A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Time Domain Fluorescence Tomography System for Small Animal Imaging</atitle><jtitle>IEEE transactions on medical imaging</jtitle><stitle>TMI</stitle><addtitle>IEEE Trans Med Imaging</addtitle><date>2008-08-01</date><risdate>2008</risdate><volume>27</volume><issue>8</issue><spage>1152</spage><epage>1163</epage><pages>1152-1163</pages><issn>0278-0062</issn><eissn>1558-254X</eissn><coden>ITMID4</coden><abstract>We describe the application of a time domain diffuse fluorescence tomography system for whole body small animal imaging. The key features of the system are the use of point excitation in free space using ultrashort laser pulses and noncontact detection using a gated, intensified charge-coupled device (CCD) camera. Mouse shaped epoxy phantoms, with embedded fluorescent inclusions, were used to verify the performance of a recently developed asymptotic lifetime-based tomography algorithm. The asymptotic algorithm is based on a multiexponential analysis of the decay portion of the data. The multiexponential model is shown to enable the use of a global analysis approach for a robust recovery of the lifetime components present within the imaging medium. The surface boundaries of the imaging volume were acquired using a photogrammetric camera integrated with the imaging system, and implemented in a Monte-Carlo model of photon propagation in tissue. The tomography results show that the asymptotic approach is able to separate axially located fluorescent inclusions centered at depths of 4 and 10 mm from the surface of the mouse phantom. The fluorescent inclusions had distinct lifetimes of 0.5 and 0.95 ns. The inclusions were nearly overlapping along the measurement axis and shown to be not resolvable using continuous wave (CW) methods. These results suggest the practical feasibility and advantages of a time domain approach for whole body small animal fluorescence molecular imaging, particularly with the use of lifetime as a contrast mechanism.</abstract><cop>United States</cop><pub>IEEE</pub><pmid>18672432</pmid><doi>10.1109/TMI.2008.918341</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Animals Charge coupled devices Charge-coupled image sensors Equipment Design Equipment Failure Analysis Fluorescence Fluorescence diffuse optical tomography Image Enhancement - instrumentation Imaging phantoms Laser excitation Lifetime lifetime-based sensing Medical imaging Mice Microscopy, Fluorescence - instrumentation Microscopy, Fluorescence - veterinary molecular imaging Optical pulses Phantoms, Imaging Space charge Studies time-resolved imaging Tomography Tomography, Optical - instrumentation Tomography, Optical - veterinary |
title | A Time Domain Fluorescence Tomography System for Small Animal Imaging |
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