Coupling of transcription and replication machineries in λ DNA replication initiation: evidence for direct interaction of Escherichia coli RNA polymerase and the λO protein

• Published in: Nucleic acids research 2011-01, Vol.39 (1), p.168-177
• Main Authors: Szambowska, Anna, Pierechod, Marcin, Węgrzyn, Grzegorz, Glinkowska, Monika
• Format: Article
• Language: English
• Subjects: Bacteriophage lambda - genetics; DNA Gyrase - metabolism; DNA Replication; DNA, Viral - biosynthesis; DNA, Viral - metabolism; DNA-Directed RNA Polymerases - metabolism; Escherichia coli; Escherichia coli - enzymology; Genome Integrity, Repair and; Transcription, Genetic; Viral Proteins - metabolism
• ISSN: 0305-1048; 1362-4962; 1362-4962
• DOI: 10.1093/nar/gkq752

Transcription proceeding downstream of the λ phage replication origin was previously shown to support initial steps of the λ primosome assembly in vitro and to regulate frequency and directionality of λ DNA replication in vivo. In this report, the data are presented indicating that the RNA polymerase β subunit makes a direct contact with the λO protein, a replication initiator of λ phage. These results suggest that the role of RNA polymerase during the initiation of λ phage DNA replication may be more complex than solely influencing DNA topology. Results demonstrated in this study also show that gyrase supercoiling activity stimulates the formation of a complex between λO and RNA polymerase, suggesting that the introduction of negative supercoils by DNA gyrase, besides lowering the energy required for DNA strand separation, may play an additional role in modeling protein-protein interactions at early steps of DNA replication initiation.