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Construction of a dengue virus type 4 reporter replicon and analysis of temperature-sensitive mutations in non-structural proteins 3 and 5
Replicon systems have been useful to study mechanisms of translation and replication of flavivirus RNAs. In this study, we constructed a dengue virus 4 replicon encoding a Renilla luciferase (R(luc)) reporter, and six single-residue substitution mutants were generated: L128F and S158P in the non-str...
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Published in: | Journal of general virology 2010-11, Vol.91 (Pt 11), p.2713-2718 |
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creator | ALCARAZ-ESTRADA, Sofia L MANZANO, Mark Irvin M DEL ANGEL, Rosa M LEVIS, Robin PADMANABHAN, R |
description | Replicon systems have been useful to study mechanisms of translation and replication of flavivirus RNAs. In this study, we constructed a dengue virus 4 replicon encoding a Renilla luciferase (R(luc)) reporter, and six single-residue substitution mutants were generated: L128F and S158P in the non-structural protein (NS) 3 protease domain gene, and N96I, N390A, K437R and M805I in the NS5 gene. The effects of these substitutions on viral RNA translation and/or replication were examined by measuring R(luc) activities in wild-type and mutant replicon RNA-transfected Vero cells incubated at 35, 37 and 39 °C. Our results show that none of the mutations affected translation of replicon RNAs; however, L128F and S158P of NS3 at 39°C, and N96I of NS5 at 37 and 39°C, presented temperature-sensitive (ts) phenotypes for replication. Furthermore, using in vitro methyltransferase assays, we identified that the N96I mutation in NS5 exhibited a ts phenotype for N7-methylation, but not for 2'-O-methylation. |
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In this study, we constructed a dengue virus 4 replicon encoding a Renilla luciferase (R(luc)) reporter, and six single-residue substitution mutants were generated: L128F and S158P in the non-structural protein (NS) 3 protease domain gene, and N96I, N390A, K437R and M805I in the NS5 gene. The effects of these substitutions on viral RNA translation and/or replication were examined by measuring R(luc) activities in wild-type and mutant replicon RNA-transfected Vero cells incubated at 35, 37 and 39 °C. Our results show that none of the mutations affected translation of replicon RNAs; however, L128F and S158P of NS3 at 39°C, and N96I of NS5 at 37 and 39°C, presented temperature-sensitive (ts) phenotypes for replication. Furthermore, using in vitro methyltransferase assays, we identified that the N96I mutation in NS5 exhibited a ts phenotype for N7-methylation, but not for 2'-O-methylation.</description><identifier>ISSN: 0022-1317</identifier><identifier>ISSN: 1465-2099</identifier><identifier>EISSN: 1465-2099</identifier><identifier>DOI: 10.1099/vir.0.024083-0</identifier><identifier>PMID: 20631089</identifier><identifier>CODEN: JGVIAY</identifier><language>eng</language><publisher>Reading: Society for General Microbiology</publisher><subject>Amino Acid Substitution - genetics ; Animal ; Animals ; Biological and medical sciences ; Cercopithecus aethiops ; Dengue Virus - genetics ; Dengue Virus - growth & development ; Dengue Virus - physiology ; Dengue virus type 4 ; Flavivirus ; Fundamental and applied biological sciences. Psychology ; Genes, Essential ; Genes, Reporter ; Genes, Viral ; Luciferases, Renilla - genetics ; Luciferases, Renilla - metabolism ; Microbiology ; Miscellaneous ; Mutation, Missense ; Protein Biosynthesis ; Protein Stability ; Recombinant Proteins - genetics ; Recombinant Proteins - metabolism ; Renilla ; Replicon ; Temperature ; Vero Cells ; Viral Nonstructural Proteins - genetics ; Virology ; Virus Replication</subject><ispartof>Journal of general virology, 2010-11, Vol.91 (Pt 11), p.2713-2718</ispartof><rights>2015 INIST-CNRS</rights><rights>Copyright © 2010, SGM 2010</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c517t-b75035b6c520546a9a84b8c53843c4484702a232b14363bb803693071b3ab84d3</citedby><cites>FETCH-LOGICAL-c517t-b75035b6c520546a9a84b8c53843c4484702a232b14363bb803693071b3ab84d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27923,27924</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=23367173$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20631089$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>ALCARAZ-ESTRADA, Sofia L</creatorcontrib><creatorcontrib>MANZANO, Mark Irvin M</creatorcontrib><creatorcontrib>DEL ANGEL, Rosa M</creatorcontrib><creatorcontrib>LEVIS, Robin</creatorcontrib><creatorcontrib>PADMANABHAN, R</creatorcontrib><title>Construction of a dengue virus type 4 reporter replicon and analysis of temperature-sensitive mutations in non-structural proteins 3 and 5</title><title>Journal of general virology</title><addtitle>J Gen Virol</addtitle><description>Replicon systems have been useful to study mechanisms of translation and replication of flavivirus RNAs. In this study, we constructed a dengue virus 4 replicon encoding a Renilla luciferase (R(luc)) reporter, and six single-residue substitution mutants were generated: L128F and S158P in the non-structural protein (NS) 3 protease domain gene, and N96I, N390A, K437R and M805I in the NS5 gene. The effects of these substitutions on viral RNA translation and/or replication were examined by measuring R(luc) activities in wild-type and mutant replicon RNA-transfected Vero cells incubated at 35, 37 and 39 °C. Our results show that none of the mutations affected translation of replicon RNAs; however, L128F and S158P of NS3 at 39°C, and N96I of NS5 at 37 and 39°C, presented temperature-sensitive (ts) phenotypes for replication. Furthermore, using in vitro methyltransferase assays, we identified that the N96I mutation in NS5 exhibited a ts phenotype for N7-methylation, but not for 2'-O-methylation.</description><subject>Amino Acid Substitution - genetics</subject><subject>Animal</subject><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>Cercopithecus aethiops</subject><subject>Dengue Virus - genetics</subject><subject>Dengue Virus - growth & development</subject><subject>Dengue Virus - physiology</subject><subject>Dengue virus type 4</subject><subject>Flavivirus</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, Essential</subject><subject>Genes, Reporter</subject><subject>Genes, Viral</subject><subject>Luciferases, Renilla - genetics</subject><subject>Luciferases, Renilla - metabolism</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Mutation, Missense</subject><subject>Protein Biosynthesis</subject><subject>Protein Stability</subject><subject>Recombinant Proteins - genetics</subject><subject>Recombinant Proteins - metabolism</subject><subject>Renilla</subject><subject>Replicon</subject><subject>Temperature</subject><subject>Vero Cells</subject><subject>Viral Nonstructural Proteins - genetics</subject><subject>Virology</subject><subject>Virus Replication</subject><issn>0022-1317</issn><issn>1465-2099</issn><issn>1465-2099</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><recordid>eNpVkU1vEzEQhi0EoqFw5Yh8QT1tGHvs_bggoYhSpEpc2rPldZxitGsv_oiUv8CvxiGhlINlS_PMMyO_hLxlsGYwDB_2Lq5hDVxAjw08IysmWtnwWnpOVgCcNwxZd0FepfQDgAkhu5fkgkOLDPphRX5tgk85FpNd8DTsqKZb6x-KpdVcEs2HxVJBo11CzDYeH5MzFdV-W4-eDsmlY1-282KjziXaJlmfXHZ7S-eS9dGcqPPUB9-cZpWoJ7rEkK2rJfwjk6_Ji52ekn1zvi_J_fXnu81Nc_vty9fNp9vGSNblZuwkoBxbIzlI0epB92LsjcReoBGiFx1wzZGPTGCL49gDtgNCx0bUYy-2eEk-nrxLGWe7Ndbnuo5aopt1PKignfq_4t139RD2CkFyKYcquDoLYvhZbMpqdsnYadLehpJUL1F0omZSyfWJNDGkFO3ucQoDdcxP1V9WoE75KagN757u9oj_DawC78-ATkZPu6i9cekfh9h2rEP8DSpIpiI</recordid><startdate>20101101</startdate><enddate>20101101</enddate><creator>ALCARAZ-ESTRADA, Sofia L</creator><creator>MANZANO, Mark Irvin M</creator><creator>DEL ANGEL, Rosa M</creator><creator>LEVIS, Robin</creator><creator>PADMANABHAN, R</creator><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>C1K</scope><scope>F1W</scope><scope>H94</scope><scope>H95</scope><scope>H97</scope><scope>L.G</scope><scope>5PM</scope></search><sort><creationdate>20101101</creationdate><title>Construction of a dengue virus type 4 reporter replicon and analysis of temperature-sensitive mutations in non-structural proteins 3 and 5</title><author>ALCARAZ-ESTRADA, Sofia L ; MANZANO, Mark Irvin M ; DEL ANGEL, Rosa M ; LEVIS, Robin ; PADMANABHAN, R</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c517t-b75035b6c520546a9a84b8c53843c4484702a232b14363bb803693071b3ab84d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Amino Acid Substitution - genetics</topic><topic>Animal</topic><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>Cercopithecus aethiops</topic><topic>Dengue Virus - genetics</topic><topic>Dengue Virus - growth & development</topic><topic>Dengue Virus - physiology</topic><topic>Dengue virus type 4</topic><topic>Flavivirus</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, Essential</topic><topic>Genes, Reporter</topic><topic>Genes, Viral</topic><topic>Luciferases, Renilla - genetics</topic><topic>Luciferases, Renilla - metabolism</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Mutation, Missense</topic><topic>Protein Biosynthesis</topic><topic>Protein Stability</topic><topic>Recombinant Proteins - genetics</topic><topic>Recombinant Proteins - metabolism</topic><topic>Renilla</topic><topic>Replicon</topic><topic>Temperature</topic><topic>Vero Cells</topic><topic>Viral Nonstructural Proteins - genetics</topic><topic>Virology</topic><topic>Virus Replication</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>ALCARAZ-ESTRADA, Sofia L</creatorcontrib><creatorcontrib>MANZANO, Mark Irvin M</creatorcontrib><creatorcontrib>DEL ANGEL, Rosa M</creatorcontrib><creatorcontrib>LEVIS, Robin</creatorcontrib><creatorcontrib>PADMANABHAN, R</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of general virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>ALCARAZ-ESTRADA, Sofia L</au><au>MANZANO, Mark Irvin M</au><au>DEL ANGEL, Rosa M</au><au>LEVIS, Robin</au><au>PADMANABHAN, R</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Construction of a dengue virus type 4 reporter replicon and analysis of temperature-sensitive mutations in non-structural proteins 3 and 5</atitle><jtitle>Journal of general virology</jtitle><addtitle>J Gen Virol</addtitle><date>2010-11-01</date><risdate>2010</risdate><volume>91</volume><issue>Pt 11</issue><spage>2713</spage><epage>2718</epage><pages>2713-2718</pages><issn>0022-1317</issn><issn>1465-2099</issn><eissn>1465-2099</eissn><coden>JGVIAY</coden><abstract>Replicon systems have been useful to study mechanisms of translation and replication of flavivirus RNAs. In this study, we constructed a dengue virus 4 replicon encoding a Renilla luciferase (R(luc)) reporter, and six single-residue substitution mutants were generated: L128F and S158P in the non-structural protein (NS) 3 protease domain gene, and N96I, N390A, K437R and M805I in the NS5 gene. The effects of these substitutions on viral RNA translation and/or replication were examined by measuring R(luc) activities in wild-type and mutant replicon RNA-transfected Vero cells incubated at 35, 37 and 39 °C. Our results show that none of the mutations affected translation of replicon RNAs; however, L128F and S158P of NS3 at 39°C, and N96I of NS5 at 37 and 39°C, presented temperature-sensitive (ts) phenotypes for replication. 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source | Freely Accessible Science Journals - check A-Z of ejournals |
subjects | Amino Acid Substitution - genetics Animal Animals Biological and medical sciences Cercopithecus aethiops Dengue Virus - genetics Dengue Virus - growth & development Dengue Virus - physiology Dengue virus type 4 Flavivirus Fundamental and applied biological sciences. Psychology Genes, Essential Genes, Reporter Genes, Viral Luciferases, Renilla - genetics Luciferases, Renilla - metabolism Microbiology Miscellaneous Mutation, Missense Protein Biosynthesis Protein Stability Recombinant Proteins - genetics Recombinant Proteins - metabolism Renilla Replicon Temperature Vero Cells Viral Nonstructural Proteins - genetics Virology Virus Replication |
title | Construction of a dengue virus type 4 reporter replicon and analysis of temperature-sensitive mutations in non-structural proteins 3 and 5 |
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