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The peroxisomal membrane protein Pex13p shows a novel mode of SH3 interaction

Src homology 3 (SH3) domains are small non‐catalytic protein modules capable of mediating protein–protein interactions by binding to proline‐X‐X‐proline (P‐X‐X‐P) motifs. Here we demonstrate that the SH3 domain of the integral peroxisomal membrane protein Pex13p is able to bind two proteins, one of...

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Published in:The EMBO journal 2000-12, Vol.19 (23), p.6382-6391
Main Authors: Barnett, Phil, Bottger, Gina, Klein, André T.J., Tabak, Henk F., Distel, Ben
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Bottger, Gina
Klein, André T.J.
Tabak, Henk F.
Distel, Ben
description Src homology 3 (SH3) domains are small non‐catalytic protein modules capable of mediating protein–protein interactions by binding to proline‐X‐X‐proline (P‐X‐X‐P) motifs. Here we demonstrate that the SH3 domain of the integral peroxisomal membrane protein Pex13p is able to bind two proteins, one of which, Pex5p, represents a novel non‐P‐X‐X‐P ligand. Using alanine scanning, two‐hybrid and in vitro interaction analysis, we show that an α‐helical element in Pex5p is necessary and sufficient for SH3 interaction. Sup pressor analysis using Pex5p mutants located in this α‐helical element allowed the identification of a unique site of interaction for Pex5p on the Pex13p‐SH3 domain that is distinct from the classical P‐X‐X‐P binding pocket. On the basis of a structural model of the Pex13p‐SH3 domain we show that this interaction probably takes place between the RT‐ and distal loops. Thus, the Pex13p‐SH3–Pex5p interaction establishes a novel mode of SH3 interaction.
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ispartof The EMBO journal, 2000-12, Vol.19 (23), p.6382-6391
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subjects Alanine - metabolism
Amino Acid Motifs
Amino Acid Sequence
Binding Sites
Binding, Competitive
Cell Division
Dose-Response Relationship, Drug
Escherichia coli - metabolism
Glutathione Transferase - metabolism
Ligands
Membrane Proteins - chemistry
Membrane Proteins - genetics
Membrane Proteins - metabolism
Models, Molecular
Molecular Sequence Data
Mutagenesis, Site-Directed
Peroxisome-Targeting Signal 1 Receptor
peroxisomes
Peroxisomes - metabolism
Pex13p
Pex5p
Proline - metabolism
Protein Binding
Protein Structure, Secondary
protein-protein interaction
Receptors, Cytoplasmic and Nuclear - chemistry
Receptors, Cytoplasmic and Nuclear - genetics
Receptors, Cytoplasmic and Nuclear - metabolism
Recombinant Fusion Proteins - metabolism
Sequence Homology, Amino Acid
SH3
src Homology Domains
Suppression, Genetic
Two-Hybrid System Techniques
title The peroxisomal membrane protein Pex13p shows a novel mode of SH3 interaction
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