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The peroxisomal membrane protein Pex13p shows a novel mode of SH3 interaction
Src homology 3 (SH3) domains are small non‐catalytic protein modules capable of mediating protein–protein interactions by binding to proline‐X‐X‐proline (P‐X‐X‐P) motifs. Here we demonstrate that the SH3 domain of the integral peroxisomal membrane protein Pex13p is able to bind two proteins, one of...
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Published in: | The EMBO journal 2000-12, Vol.19 (23), p.6382-6391 |
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creator | Barnett, Phil Bottger, Gina Klein, André T.J. Tabak, Henk F. Distel, Ben |
description | Src homology 3 (SH3) domains are small non‐catalytic protein modules capable of mediating protein–protein interactions by binding to proline‐X‐X‐proline (P‐X‐X‐P) motifs. Here we demonstrate that the SH3 domain of the integral peroxisomal membrane protein Pex13p is able to bind two proteins, one of which, Pex5p, represents a novel non‐P‐X‐X‐P ligand. Using alanine scanning, two‐hybrid and
in vitro
interaction analysis, we show that an α‐helical element in Pex5p is necessary and sufficient for SH3 interaction. Sup pressor analysis using Pex5p mutants located in this α‐helical element allowed the identification of a unique site of interaction for Pex5p on the Pex13p‐SH3 domain that is distinct from the classical P‐X‐X‐P binding pocket. On the basis of a structural model of the Pex13p‐SH3 domain we show that this interaction probably takes place between the RT‐ and distal loops. Thus, the Pex13p‐SH3–Pex5p interaction establishes a novel mode of SH3 interaction. |
doi_str_mv | 10.1093/emboj/19.23.6382 |
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in vitro
interaction analysis, we show that an α‐helical element in Pex5p is necessary and sufficient for SH3 interaction. Sup pressor analysis using Pex5p mutants located in this α‐helical element allowed the identification of a unique site of interaction for Pex5p on the Pex13p‐SH3 domain that is distinct from the classical P‐X‐X‐P binding pocket. On the basis of a structural model of the Pex13p‐SH3 domain we show that this interaction probably takes place between the RT‐ and distal loops. Thus, the Pex13p‐SH3–Pex5p interaction establishes a novel mode of SH3 interaction.</description><identifier>ISSN: 0261-4189</identifier><identifier>ISSN: 1460-2075</identifier><identifier>EISSN: 1460-2075</identifier><identifier>DOI: 10.1093/emboj/19.23.6382</identifier><identifier>PMID: 11101511</identifier><identifier>CODEN: EMJODG</identifier><language>eng</language><publisher>Chichester, UK: John Wiley & Sons, Ltd</publisher><subject>Alanine - metabolism ; Amino Acid Motifs ; Amino Acid Sequence ; Binding Sites ; Binding, Competitive ; Cell Division ; Dose-Response Relationship, Drug ; Escherichia coli - metabolism ; Glutathione Transferase - metabolism ; Ligands ; Membrane Proteins - chemistry ; Membrane Proteins - genetics ; Membrane Proteins - metabolism ; Models, Molecular ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; Peroxisome-Targeting Signal 1 Receptor ; peroxisomes ; Peroxisomes - metabolism ; Pex13p ; Pex5p ; Proline - metabolism ; Protein Binding ; Protein Structure, Secondary ; protein-protein interaction ; Receptors, Cytoplasmic and Nuclear - chemistry ; Receptors, Cytoplasmic and Nuclear - genetics ; Receptors, Cytoplasmic and Nuclear - metabolism ; Recombinant Fusion Proteins - metabolism ; Sequence Homology, Amino Acid ; SH3 ; src Homology Domains ; Suppression, Genetic ; Two-Hybrid System Techniques</subject><ispartof>The EMBO journal, 2000-12, Vol.19 (23), p.6382-6391</ispartof><rights>European Molecular Biology Organization 2000</rights><rights>Copyright © 2000 European Molecular Biology Organization</rights><rights>Copyright Oxford University Press(England) Dec 01, 2000</rights><rights>Copyright © 2000 European Molecular Biology Organization 2000</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6361-d06e002fe4b5c9c2533afa93494899bd6abd7758254459b9c64c29f4aa2c9d3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC305852/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC305852/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27922,27923,53789,53791</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11101511$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Barnett, Phil</creatorcontrib><creatorcontrib>Bottger, Gina</creatorcontrib><creatorcontrib>Klein, André T.J.</creatorcontrib><creatorcontrib>Tabak, Henk F.</creatorcontrib><creatorcontrib>Distel, Ben</creatorcontrib><title>The peroxisomal membrane protein Pex13p shows a novel mode of SH3 interaction</title><title>The EMBO journal</title><addtitle>EMBO J</addtitle><addtitle>EMBO J</addtitle><description>Src homology 3 (SH3) domains are small non‐catalytic protein modules capable of mediating protein–protein interactions by binding to proline‐X‐X‐proline (P‐X‐X‐P) motifs. Here we demonstrate that the SH3 domain of the integral peroxisomal membrane protein Pex13p is able to bind two proteins, one of which, Pex5p, represents a novel non‐P‐X‐X‐P ligand. Using alanine scanning, two‐hybrid and
in vitro
interaction analysis, we show that an α‐helical element in Pex5p is necessary and sufficient for SH3 interaction. Sup pressor analysis using Pex5p mutants located in this α‐helical element allowed the identification of a unique site of interaction for Pex5p on the Pex13p‐SH3 domain that is distinct from the classical P‐X‐X‐P binding pocket. On the basis of a structural model of the Pex13p‐SH3 domain we show that this interaction probably takes place between the RT‐ and distal loops. Thus, the Pex13p‐SH3–Pex5p interaction establishes a novel mode of SH3 interaction.</description><subject>Alanine - metabolism</subject><subject>Amino Acid Motifs</subject><subject>Amino Acid Sequence</subject><subject>Binding Sites</subject><subject>Binding, Competitive</subject><subject>Cell Division</subject><subject>Dose-Response Relationship, Drug</subject><subject>Escherichia coli - metabolism</subject><subject>Glutathione Transferase - metabolism</subject><subject>Ligands</subject><subject>Membrane Proteins - chemistry</subject><subject>Membrane Proteins - genetics</subject><subject>Membrane Proteins - metabolism</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Mutagenesis, Site-Directed</subject><subject>Peroxisome-Targeting Signal 1 Receptor</subject><subject>peroxisomes</subject><subject>Peroxisomes - metabolism</subject><subject>Pex13p</subject><subject>Pex5p</subject><subject>Proline - metabolism</subject><subject>Protein Binding</subject><subject>Protein Structure, Secondary</subject><subject>protein-protein interaction</subject><subject>Receptors, Cytoplasmic and Nuclear - chemistry</subject><subject>Receptors, Cytoplasmic and Nuclear - genetics</subject><subject>Receptors, Cytoplasmic and Nuclear - metabolism</subject><subject>Recombinant Fusion Proteins - metabolism</subject><subject>Sequence Homology, Amino Acid</subject><subject>SH3</subject><subject>src Homology Domains</subject><subject>Suppression, Genetic</subject><subject>Two-Hybrid System Techniques</subject><issn>0261-4189</issn><issn>1460-2075</issn><issn>1460-2075</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><recordid>eNqFkM1vEzEQxS1ERUPLnQvI4r6pP3fXBw40Ki00LaBWytHy7s42Dlk72Js2_e9x2CgtB8TJkuf93rx5CL2lZEyJ4ifQVX5xQtWY8XHOS_YCjajIScZIIV-iEWE5zQQt1SF6HeOCECLLgr5Ch5RSQiWlI3R1Owe8guA3NvrOLHGXPINx6TP4HqzD32FD-QrHuX-I2GDn7yGpfAPYt_jmgmPregim7q13x-igNcsIb3bvEbr5fHY7ucim386_TD5NszrnKVJDciCEtSAqWauaSc5NaxQXSpRKVU1uqqYoZMmkEFJVqs5FzVQrjGG1avgR-ji4rtZVB00Nrg9mqVfBdiY8am-s_nvi7Fzf-XvN0_2SJf7Djg_-1xpirxd-HVwKrKmSaalkZRKRQVQHH2OAdu9Pid6Wr_-UnwjNuN6Wn5D3z3M9Abu2k0ANgge7hMf_Guqzq9OvhUy9yC1LBzYmzN1BeBb634HeDYwz_TrAfuGTZzbMbexhsx-b8FPnBS-knl2f62J6OZOTWal_8N8QhbxK</recordid><startdate>20001201</startdate><enddate>20001201</enddate><creator>Barnett, Phil</creator><creator>Bottger, Gina</creator><creator>Klein, André T.J.</creator><creator>Tabak, Henk F.</creator><creator>Distel, Ben</creator><general>John Wiley & Sons, Ltd</general><general>Nature Publishing Group UK</general><general>Blackwell Publishing Ltd</general><general>Oxford University Press</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>5PM</scope></search><sort><creationdate>20001201</creationdate><title>The peroxisomal membrane protein Pex13p shows a novel mode of SH3 interaction</title><author>Barnett, Phil ; Bottger, Gina ; Klein, André T.J. ; Tabak, Henk F. ; Distel, Ben</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6361-d06e002fe4b5c9c2533afa93494899bd6abd7758254459b9c64c29f4aa2c9d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2000</creationdate><topic>Alanine - 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metabolism</topic><topic>Recombinant Fusion Proteins - metabolism</topic><topic>Sequence Homology, Amino Acid</topic><topic>SH3</topic><topic>src Homology Domains</topic><topic>Suppression, Genetic</topic><topic>Two-Hybrid System Techniques</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Barnett, Phil</creatorcontrib><creatorcontrib>Bottger, Gina</creatorcontrib><creatorcontrib>Klein, André T.J.</creatorcontrib><creatorcontrib>Tabak, Henk F.</creatorcontrib><creatorcontrib>Distel, Ben</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>ProQuest - 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Here we demonstrate that the SH3 domain of the integral peroxisomal membrane protein Pex13p is able to bind two proteins, one of which, Pex5p, represents a novel non‐P‐X‐X‐P ligand. Using alanine scanning, two‐hybrid and
in vitro
interaction analysis, we show that an α‐helical element in Pex5p is necessary and sufficient for SH3 interaction. Sup pressor analysis using Pex5p mutants located in this α‐helical element allowed the identification of a unique site of interaction for Pex5p on the Pex13p‐SH3 domain that is distinct from the classical P‐X‐X‐P binding pocket. On the basis of a structural model of the Pex13p‐SH3 domain we show that this interaction probably takes place between the RT‐ and distal loops. Thus, the Pex13p‐SH3–Pex5p interaction establishes a novel mode of SH3 interaction.</abstract><cop>Chichester, UK</cop><pub>John Wiley & Sons, Ltd</pub><pmid>11101511</pmid><doi>10.1093/emboj/19.23.6382</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Alanine - metabolism Amino Acid Motifs Amino Acid Sequence Binding Sites Binding, Competitive Cell Division Dose-Response Relationship, Drug Escherichia coli - metabolism Glutathione Transferase - metabolism Ligands Membrane Proteins - chemistry Membrane Proteins - genetics Membrane Proteins - metabolism Models, Molecular Molecular Sequence Data Mutagenesis, Site-Directed Peroxisome-Targeting Signal 1 Receptor peroxisomes Peroxisomes - metabolism Pex13p Pex5p Proline - metabolism Protein Binding Protein Structure, Secondary protein-protein interaction Receptors, Cytoplasmic and Nuclear - chemistry Receptors, Cytoplasmic and Nuclear - genetics Receptors, Cytoplasmic and Nuclear - metabolism Recombinant Fusion Proteins - metabolism Sequence Homology, Amino Acid SH3 src Homology Domains Suppression, Genetic Two-Hybrid System Techniques |
title | The peroxisomal membrane protein Pex13p shows a novel mode of SH3 interaction |
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